Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1283
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    31   0.72 
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    31   0.72 
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.    31   0.72 
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    31   0.72 
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    31   0.72 
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    31   0.95 
U10402-5|AAA19066.2|  650|Caenorhabditis elegans Tryptophanyl (w...    31   1.3  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z81581-4|CAB04663.2|  568|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical pr...    28   8.9  
U64848-8|ABS83847.1|  408|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AL033514-15|CAA22102.1|  272|Caenorhabditis elegans Hypothetical...    28   8.9  

>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 755  STLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGN 642
            S+L   +P  V   +    +S YFRT+++ G  L+ GN
Sbjct: 2700 SSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 2737



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/64 (21%), Positives = 31/64 (48%)
 Frame = -2

Query: 230  KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 51
            K +   N  + + K I+  +       DG GY +     +   ++ ++ L F T++P+GL
Sbjct: 2876 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 2934

Query: 50   IYLL 39
            ++ +
Sbjct: 2935 LFFV 2938


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 755  STLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGN 642
            S+L   +P  V   +    +S YFRT+++ G  L+ GN
Sbjct: 2700 SSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 2737



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/64 (21%), Positives = 31/64 (48%)
 Frame = -2

Query: 230  KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 51
            K +   N  + + K I+  +       DG GY +     +   ++ ++ L F T++P+GL
Sbjct: 2876 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 2934

Query: 50   IYLL 39
            ++ +
Sbjct: 2935 LFFV 2938


>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
          Length = 1518

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 755 STLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGN 642
           S+L   +P  V   +    +S YFRT+++ G  L+ GN
Sbjct: 514 SSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 551



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/64 (21%), Positives = 31/64 (48%)
 Frame = -2

Query: 230 KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 51
           K +   N  + + K I+  +       DG GY +     +   ++ ++ L F T++P+GL
Sbjct: 690 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 748

Query: 50  IYLL 39
           ++ +
Sbjct: 749 LFFV 752


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 755  STLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGN 642
            S+L   +P  V   +    +S YFRT+++ G  L+ GN
Sbjct: 2700 SSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 2737



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/64 (21%), Positives = 31/64 (48%)
 Frame = -2

Query: 230  KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 51
            K +   N  + + K I+  +       DG GY +     +   ++ ++ L F T++P+GL
Sbjct: 2876 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 2934

Query: 50   IYLL 39
            ++ +
Sbjct: 2935 LFFV 2938


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 755  STLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGN 642
            S+L   +P  V   +    +S YFRT+++ G  L+ GN
Sbjct: 2700 SSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 2737



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/64 (21%), Positives = 31/64 (48%)
 Frame = -2

Query: 230  KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 51
            K +   N  + + K I+  +       DG GY +     +   ++ ++ L F T++P+GL
Sbjct: 2876 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 2934

Query: 50   IYLL 39
            ++ +
Sbjct: 2935 LFFV 2938


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
 Frame = +2

Query: 194 PWVLWSYLSTMTWYQRLSATTCQWRPSPDPGQVRSCPRCPSL-HTGIRSEC----RSPCS 358
           P  + + + T +   +   TT Q  P+P P Q +    CP L      S+C    + PC 
Sbjct: 485 PKCIIATIKTPSQQPQFVVTTTQAPPAPAPQQQQQLASCPQLCQPQCTSQCVQQQQCPCQ 544

Query: 359 RPKKR*CEILEIVLKCCECVTCVSVC 436
           +  +  C+      + C+ V CV VC
Sbjct: 545 QTCQTGCQQHNPDARVCQNV-CVEVC 569


>U10402-5|AAA19066.2|  650|Caenorhabditis elegans Tryptophanyl (w)
           trna synthetaseprotein 2, isoform a protein.
          Length = 650

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = -2

Query: 764 CRWSTLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGNPKGTM 627
           CR    QPR P+ +  +STSTH + YF   +  G I +LGN  G++
Sbjct: 299 CRLE-FQPRDPNNLRLLSTSTHPTIYFTGIQPTG-IPHLGNFFGSI 342


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 320  HTGIRSECRSPCSRPKKR*CEILEIVLKCCECVTCVSVCFYDVRVLRSECE 472
            H+G   +    C+ P +R CE +E      + V+C+SV  Y+   L S CE
Sbjct: 1653 HSGFEGDGIKKCTNPLERSCEDVEKFCGRVDHVSCLSVRIYN-GSLSSVCE 1702


>Z81581-4|CAB04663.2|  568|Caenorhabditis elegans Hypothetical
           protein T02E1.2 protein.
          Length = 568

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 432 TLTH-VTHS-QHFNTISNISHYRFLGRLHGDRHSERIPV 322
           TL H  T+S QHF+   ++  Y+F G L  D  +E +P+
Sbjct: 342 TLAHFATYSFQHFDEFVHVVPYKFSGTLDRDLRNEIMPI 380


>Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical
           protein K08F8.2 protein.
          Length = 401

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +2

Query: 242 LSATTCQWRPSPDPGQVR----SCPRCPSLHTGIRSECRSPCS 358
           LSA   Q RPSP   Q R    S    P  HTG +S+C S  S
Sbjct: 267 LSALLSQRRPSPTVPQSRTEHISGLNSPPRHTGNKSDCESVSS 309


>U64848-8|ABS83847.1|  408|Caenorhabditis elegans Hypothetical
           protein C50E3.16 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 188 IYPWVLWSYLSTMTWYQRLSATTCQWRPSPD 280
           +  W +WS LS+  +YQ ++ T   W   P+
Sbjct: 213 VLKWSIWSALSSCIFYQIINYTQTLWGTLPE 243


>AL033514-15|CAA22102.1|  272|Caenorhabditis elegans Hypothetical
           protein Y75B8A.14 protein.
          Length = 272

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 201 FCGVTCQR*LGTSGCRQPLVNGDPRRILARFGAVPDVHHYIRVSVLNADHHVVVLKNGSV 380
           +C V     L T G    +VN DP   +  + AV DV   I V+ +  D  +++  NG++
Sbjct: 18  YCSVMYNHCLST-GRTLRMVNLDPACEVFNYPAVVDVRDLISVNDVQEDEELILGPNGAL 76

Query: 381 KY 386
            +
Sbjct: 77  VF 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,219,009
Number of Sequences: 27780
Number of extensions: 483337
Number of successful extensions: 1373
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)