Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1283
         (795 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02890.1 68416.m00284 PHD finger protein-related contains low...    33   0.29 
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen...    31   1.2  
At2g16750.1 68415.m01921 protein kinase family protein contains ...    30   2.0  
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ...    29   3.6  
At3g62800.2 68416.m07056 double-stranded RNA-binding domain (DsR...    28   6.2  
At3g62800.1 68416.m07055 double-stranded RNA-binding domain (DsR...    28   6.2  
At1g64620.1 68414.m07325 Dof-type zinc finger domain-containing ...    28   8.2  

>At3g02890.1 68416.m00284 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 963

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 26/85 (30%), Positives = 39/85 (45%)
 Frame = -1

Query: 525 NALMSTALNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISHYRFLGRLHGD 346
           N L S+ +N  G+  H  S    +   S   T +    S+     S+ISH   L R H D
Sbjct: 58  NLLRSSGVNAPGSS-HNTSSEASHLVNSNHDTSSENAESKEIIRSSDISHGPLLDRPHKD 116

Query: 345 RHSERIPVCSDGHRGQLRTWPGSGE 271
           + S ++  C+D H  Q R+  G G+
Sbjct: 117 QDSMKVDSCND-H--QARSTLGQGK 138


>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
           for histone protein GB:X15142 GI:3204 [Physarum
           polycephalum]
          Length = 614

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 305 GDSSEPGQDPARVSIDKWLPTTAGTKSSLTGNS 207
           GDS  PG D    S D   PT  G+    TG+S
Sbjct: 138 GDSGSPGSDSGSPSADTGSPTDGGSYGDTTGDS 170


>At2g16750.1 68415.m01921 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 617

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 386 LEIVLKCCECVTCVSVCFYDVRVLRSECEFVCYIVPVI 499
           LE V K  +CV  V VCF   R L+S+     Y+ P I
Sbjct: 32  LEEVAKHGDCVVVVHVCFTYYRALKSKSSLDRYLKPYI 69


>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
           WD-40 repeats (PF0400);  similar to WD-40 repeat protein
           MSI4 (SP:O22607) [Arabidopsis thaliana]
          Length = 496

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -2

Query: 485 YNTQTHTHFVTRAHHKNTHSHM*RTHNTSTQFLIFHTTVF*DDYMVIGIQNGYPYVVM 312
           Y T  H   V R      +S +  TH  S   LI++T    D Y V+G  +  P +++
Sbjct: 147 YKTIIHPGEVNRIRELPQNSKIVATHTDSPDILIWNTETQPDRYAVLGAPDSRPDLLL 204


>At3g62800.2 68416.m07056 double-stranded RNA-binding domain
           (DsRBD)-containing protein weak similarity to  SP|P19525
           Interferon-induced, double-stranded RNA-activated
           protein kinase (EC 2.7.1.-) {Homo sapiens}; contains
           Pfam profile PF00035: Double-stranded RNA binding motif
          Length = 355

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 172 DCEEINLSLGSVELPVNDDLVPAVVGNHLSMETLAGSWPGSELSPMSITTYGYP 333
           + +EIN++L   E P ND  + A+  + + M   + S P    +P ++ T   P
Sbjct: 216 NAKEINVALNEPENPTNDGTLSALTTDGMKMNIASSSLPIPH-NPTNVITLNAP 268


>At3g62800.1 68416.m07055 double-stranded RNA-binding domain
           (DsRBD)-containing protein weak similarity to  SP|P19525
           Interferon-induced, double-stranded RNA-activated
           protein kinase (EC 2.7.1.-) {Homo sapiens}; contains
           Pfam profile PF00035: Double-stranded RNA binding motif
          Length = 355

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 172 DCEEINLSLGSVELPVNDDLVPAVVGNHLSMETLAGSWPGSELSPMSITTYGYP 333
           + +EIN++L   E P ND  + A+  + + M   + S P    +P ++ T   P
Sbjct: 216 NAKEINVALNEPENPTNDGTLSALTTDGMKMNIASSSLPIPH-NPTNVITLNAP 268


>At1g64620.1 68414.m07325 Dof-type zinc finger domain-containing
           protein similar to Dof zinc finger protein GB:CAA08755
           GI:3341468 from [Nicotiana tabacum]
          Length = 352

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 248 ATTCQWRPSPDPGQVRSCPRCPSLHT 325
           AT  + +  P+  Q  +CPRC SL+T
Sbjct: 34  ATPVERKARPEKDQALNCPRCNSLNT 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,924,388
Number of Sequences: 28952
Number of extensions: 436925
Number of successful extensions: 1151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)