Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1282
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.1  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    27   2.8  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    27   3.7  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    26   6.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   8.6  

>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 675 LTCVKHQFSATGVFPSCNGLGTRLTAI 595
           L+CV  +F  TGV P  + +G RLT I
Sbjct: 187 LSCVPVEFQLTGVKPENSKVGWRLTKI 213


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 639 VFPSCNGLGTRLTAIPPAPFEETRADCGEGAPPPDPP 529
           VFPS N  G R + +P    + T  D GE   P  PP
Sbjct: 459 VFPSINSFGRRHSNLP----QTTHVDTGEQNTPFTPP 491


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 630 SCNGLGTRLTAIPPAPFEETRADCGEGAPPPDPP 529
           +C G G RL  IPP+   +T  D   G     PP
Sbjct: 259 ACKGTGQRLHFIPPSFHMQTTCDSCGGTGTTIPP 292


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 237 CNGRRATAHPMMSGH*CSRISAIK 308
           CNGR   AH +M  H C  + +++
Sbjct: 169 CNGRFCAAHRLMEDHDCVALFSLR 192


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -2

Query: 597 IPPAPFEETRADCGEGAPPPDPPTHSLPEPASTKRS 490
           IPP  +   +AD     PPP PPT  LP P ST  S
Sbjct: 223 IPPT-YTPKQADPLPAPPPPPPPT--LP-PQSTNTS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,310
Number of Sequences: 5004
Number of extensions: 50015
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)