Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1282
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39453| Best HMM Match : BTB (HMM E-Value=3.1e-36)                   83   3e-16
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.24 
SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13)                   31   0.74 
SB_5350| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.98 
SB_24353| Best HMM Match : CUB (HMM E-Value=0.18)                      31   1.3  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            29   3.0  
SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)               29   3.0  
SB_17926| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_49825| Best HMM Match : cobW (HMM E-Value=7.6)                      29   4.0  
SB_18230| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_17635| Best HMM Match : CUB (HMM E-Value=0)                         29   5.2  
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013)                  29   5.2  
SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)                   29   5.2  
SB_55865| Best HMM Match : RRS1 (HMM E-Value=6.4e-07)                  28   6.9  
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   28   6.9  
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_39453| Best HMM Match : BTB (HMM E-Value=3.1e-36)
          Length = 398

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 32/36 (88%), Positives = 36/36 (100%)
 Frame = +2

Query: 635 NTPVAENWCFTQVKVVKFSYMWTINNFSFCREEMGE 742
           +TPVAENWC+TQ+KV+KFSYMWTINNFSFCREEMGE
Sbjct: 38  STPVAENWCYTQIKVIKFSYMWTINNFSFCREEMGE 73


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -2

Query: 633 PSCNGLGTRLTAIPPAPFEETRADCGEGAPPPDPPTHSLP 514
           P   G     T   PAP + T AD   G P P PP  +LP
Sbjct: 288 PEDKGTNKPTTEEKPAPAKSTWADLFRGVPKPTPPVAALP 327


>SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13)
          Length = 470

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -2

Query: 609 RLTAIPPAPFEETRA--DCGEGAPPPDPPTHSLPEPASTKRSAR 484
           RL  + P P  +     D G   P P PPTH    P ST+ S R
Sbjct: 205 RLRPVSPNPCTQDSIVKDFGMDTPHPGPPTHDYHSPHSTETSRR 248


>SB_5350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = -2

Query: 591 PAPFEETRADCGEGAPPPDPPTHSLPEPAST 499
           PAP   T   C   APPP PP    P P ST
Sbjct: 365 PAPLSST--PCAPFAPPPPPPPPPPPAPGST 393


>SB_24353| Best HMM Match : CUB (HMM E-Value=0.18)
          Length = 564

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 597 IPPAPFEETRADCGEGAPPPDPPTHSLPEPAST 499
           +PP   E TR D  E + P DP TH+  +PAS+
Sbjct: 263 MPPTYEEATRID--ENSQPTDPNTHASTDPASS 293


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
 Frame = -2

Query: 639 VFPSCNGLGTRLTAIPPAPFEETRADCG-----EGAPPPD--PPTHSLPEPASTKRSARF 481
           VF S +G+ T +TA PPAP     A          APPP    P+  +P P +    + F
Sbjct: 443 VFASSSGVPTPVTAPPPAPPPSVFAPSSGVPTPVAAPPPSVFAPSSGVPTPVAAPPPSVF 502

Query: 480 A 478
           A
Sbjct: 503 A 503



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 639 VFPSCNGLGTRLTAIPPAPFEETRADCGEGAPPPDPPTHSLPEPAS 502
           VF S +G+ T + A PP+ F  +       A PP  P  S+  P+S
Sbjct: 367 VFASSSGVPTPVKAPPPSVFASSSGVPTPVAAPPPAPPPSVFAPSS 412


>SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)
          Length = 537

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 603 TAIPPAPFEETRADCGEGAPPPDPPTHSLPEPAS 502
           T++   P E ++ +  +  PPP PP  + P P S
Sbjct: 246 TSVQVQPLETSKDNAKQLMPPPPPPPRATPPPVS 279


>SB_17926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1078

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = -2

Query: 618 LGTRLTAIPPAPFEETRADCGEG-APPPDPPTHSLPEPASTKRSARFADYTLL*HFETWR 442
           + T   +   +P +    DC +  APPP+P T S   PA+     +  ++ L  +  T+ 
Sbjct: 265 ISTSTGSADQSPQQPKLCDCPQRQAPPPNPSTLSF--PATETNREQLQEWLLNHYSSTFN 322

Query: 441 GLEEKSSGFGTKSLPLPCFPSAMRG 367
            +  +   + T  +P PC  S  RG
Sbjct: 323 TVPMRCGQWPT--IPNPCATSLARG 345


>SB_49825| Best HMM Match : cobW (HMM E-Value=7.6)
          Length = 143

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -2

Query: 612 TRLTAIPPAPFEET--RADCGEGAPPPDPPTHSLPEPASTKRSARFADYTLL*H 457
           T +  +PP P + T    + G  AP P PP H++ + AS +R  + + Y    H
Sbjct: 91  TLINRVPPPPNQATLPTGEHGRIAPNP-PPVHNVHKDASRRRYDQDSQYVCTIH 143


>SB_18230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 289 QGYQQSRVQLNRCLHTGSHSELD*KRTPHSARETR*R 399
           +GY+  ++Q+ +  H G   E+  K  P ++R+T+ R
Sbjct: 69  RGYRLDKLQVTKYTHKGGPGEISFKPLPRNSRDTKVR 105


>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
          Length = 630

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 600 AIPPAPFEETRADCGEGAPPPDPPTHSLPEPASTKRSA 487
           A PP P++ + + C   +PP  PP +S  E + +   A
Sbjct: 524 ASPPPPYQVSGSACSTESPPLHPPPYSHHEASESPPEA 561


>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = -2

Query: 615 GTRLTAIPPAP---FEETRADCGEGAPPPDPPTHSLPEP 508
           G R   +PP P      ++   G+GA PP    H  P+P
Sbjct: 398 GNRGVPVPPQPQLPVNTSKIKVGQGAAPPHTAQHQQPQP 436


>SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013)
          Length = 517

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +2

Query: 338 EVIRSSIKKGPLIALG----KHGRGRDFVPKPDDFSSKPLQVSKCH 463
           EV+++ I  GP + L     K   GRD+  +   +S  PLQV+K H
Sbjct: 383 EVVKNLIDFGPKVTLLRQKLKQHIGRDWTKEETVYSKNPLQVAKQH 428


>SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)
          Length = 336

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -2

Query: 633 PSCNGLGTRLTAIPPAPFEETRADCGEGAPPPDPPTHSLPEPASTKRS 490
           P    L  R T +PP P   T A      P   P T+S P P + + S
Sbjct: 218 PDNQNLSVRPTQLPPPPPLPTSATPTGTTPSVSPATYSSPTPVTIQGS 265


>SB_55865| Best HMM Match : RRS1 (HMM E-Value=6.4e-07)
          Length = 424

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 308 EYS*TAAFTLEVIRSSIKKGPLIALGK 388
           EYS     TLEV+   +KKGP++ + K
Sbjct: 346 EYSSEKTKTLEVVEKMLKKGPVLDINK 372


>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -2

Query: 606 LTAIPPAPFEETRADCGEGAPPPDPPTHSLPEP 508
           +  +PP P          GAPPP PP    P P
Sbjct: 191 MAGMPPPPPPPPPPGFPGGAPPPPPPPFGAPPP 223


>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -2

Query: 603 TAIPPAPFEETRADCGEGAPPPDPPTHSLPEPASTKR 493
           T  PP   +       E  PP D PT +  EP + K+
Sbjct: 124 TTSPPTTTDSPPTTAAETLPPTDAPTEAPTEPPTEKK 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,489,746
Number of Sequences: 59808
Number of extensions: 423865
Number of successful extensions: 1581
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1540
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)