Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1282
         (742 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    25   3.2  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   4.3  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    24   5.7  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    23   7.5  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   7.5  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    23   7.5  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            23   9.9  

>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -2

Query: 591 PAPFEETRADCGEGAPPPDPPTHSLPEPASTKR 493
           P+P     AD     PPP PP  S   P    R
Sbjct: 769 PSPSRSAFADGIGSPPPPPPPPPSSLSPGGVPR 801


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
 Frame = -2

Query: 660 HQFSATG---VFPSCNGLGTRLTAIPP 589
           H FSA     +  SCN LG  +  +PP
Sbjct: 363 HHFSAASQRFMLRSCNSLGDHIPPLPP 389


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = -2

Query: 669 CVKHQFSATGVFPSCNGLGTRLTAIPPAPFEETRAD 562
           CV+ Q   TG     N   T  T   P P E+   D
Sbjct: 687 CVQCQQYKTGPLAEANECATNCTLFVPIPVEKVTID 722


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 189 SPGRLYCLVDRQAFEDCNGRRATAHPMMSG 278
           S G   C  +  A  D NG+  T H ++SG
Sbjct: 546 SSGNYMCRSNPPAQSDHNGKIITYHQLLSG 575


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 196 PGEPGPRAIRG 164
           PG+PGP  +RG
Sbjct: 485 PGQPGPEGLRG 495



 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 199 RPGEPGPRAIRG 164
           RPG PGP+  RG
Sbjct: 409 RPGAPGPKGPRG 420


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -2

Query: 579 EETRADCGEGAPPPDPPTHSLPEPASTKRSA 487
           ++ R      A  P PPTH L +P     +A
Sbjct: 905 QQHRGPGAAAATGPPPPTHRLEQPPQVVAAA 935


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 412 NEVSSSTVFPERYEGSFFNRAPNDFQCEGSG 320
           + V    +  ++  GS  N APND    G+G
Sbjct: 487 SSVQDLRILQKKVHGSVVNLAPNDGPPHGAG 517


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 678,151
Number of Sequences: 2352
Number of extensions: 14396
Number of successful extensions: 36
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76091949
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)