Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1282
(742 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z30662-10|CAI58651.1| 409|Caenorhabditis elegans Hypothetical p... 87 2e-17
Z30662-9|CAA83138.2| 451|Caenorhabditis elegans Hypothetical pr... 87 2e-17
Z79759-4|CAB02139.2| 395|Caenorhabditis elegans Hypothetical pr... 32 0.37
U67737-1|AAC63596.1| 395|Caenorhabditis elegans MEL-26 protein. 32 0.37
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 31 1.1
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 31 1.1
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 31 1.1
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 31 1.1
AF106582-7|ABD94096.1| 806|Caenorhabditis elegans Hypothetical ... 30 1.5
AF106582-6|ABD94095.1| 834|Caenorhabditis elegans Hypothetical ... 30 1.5
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 30 2.0
Z29094-13|CAI79130.1| 296|Caenorhabditis elegans Hypothetical p... 29 2.6
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 29 2.6
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 29 3.5
AC006624-1|AAF39785.1| 73|Caenorhabditis elegans Hypothetical ... 29 3.5
Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z83228-2|CAB05733.1| 370|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 6.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 6.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 6.0
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 28 6.0
>Z30662-10|CAI58651.1| 409|Caenorhabditis elegans Hypothetical
protein T16H12.5b protein.
Length = 409
Score = 86.6 bits (205), Expect = 2e-17
Identities = 40/58 (68%), Positives = 44/58 (75%), Gaps = 2/58 (3%)
Frame = +2
Query: 575 SSNGAGGMAVSRVPSPLHDGNT--PVAENWCFTQVKVVKFSYMWTINNFSFCREEMGE 742
S N A G ++S PS G+ PVAENWC TQVKVVKF+YMWTINNFSFCREEMGE
Sbjct: 15 SGNSAHGRSISPSPSSASHGDPLLPVAENWCHTQVKVVKFNYMWTINNFSFCREEMGE 72
>Z30662-9|CAA83138.2| 451|Caenorhabditis elegans Hypothetical
protein T16H12.5a protein.
Length = 451
Score = 86.6 bits (205), Expect = 2e-17
Identities = 40/58 (68%), Positives = 44/58 (75%), Gaps = 2/58 (3%)
Frame = +2
Query: 575 SSNGAGGMAVSRVPSPLHDGNT--PVAENWCFTQVKVVKFSYMWTINNFSFCREEMGE 742
S N A G ++S PS G+ PVAENWC TQVKVVKF+YMWTINNFSFCREEMGE
Sbjct: 57 SGNSAHGRSISPSPSSASHGDPLLPVAENWCHTQVKVVKFNYMWTINNFSFCREEMGE 114
>Z79759-4|CAB02139.2| 395|Caenorhabditis elegans Hypothetical
protein ZK858.4 protein.
Length = 395
Score = 32.3 bits (70), Expect = 0.37
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 665 TQVKVVKFSYMWTINNFSFCREE 733
T++KV K + WT+ NFS C +E
Sbjct: 35 TEIKVEKVQHTWTVKNFSHCYQE 57
>U67737-1|AAC63596.1| 395|Caenorhabditis elegans MEL-26 protein.
Length = 395
Score = 32.3 bits (70), Expect = 0.37
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 665 TQVKVVKFSYMWTINNFSFCREE 733
T++KV K + WT+ NFS C +E
Sbjct: 35 TEIKVEKVQHTWTVKNFSHCYQE 57
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 564 DCGEGAPPPDPPTHSLPEPASTKRSARFA 478
D G PPP PP+H +P++T R + A
Sbjct: 2343 DIGINPPPPPPPSHVHTKPSATARMSSIA 2371
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 564 DCGEGAPPPDPPTHSLPEPASTKRSARFA 478
D G PPP PP+H +P++T R + A
Sbjct: 2343 DIGINPPPPPPPSHVHTKPSATARMSSIA 2371
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 546 PPPDPPTHSLPEPASTKRSARFAD 475
PPP PP S P P+S R+A D
Sbjct: 12 PPPPPPAASAPPPSSNARNALLGD 35
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 546 PPPDPPTHSLPEPASTKRSARFAD 475
PPP PP S P P+S R+A D
Sbjct: 12 PPPPPPAASAPPPSSNARNALLGD 35
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/60 (30%), Positives = 23/60 (38%)
Frame = -2
Query: 684 FTTLTCVKHQFSATGVFPSCNGLGTRLTAIPPAPFEETRADCGEGAPPPDPPTHSLPEPA 505
FT++ F G G PPA CG GAPP PP ++ P P+
Sbjct: 7 FTSMIAASSAFLFPSAGGGGGGCGCGAPPPPPACAPPPAPACGGGAPP--PPAYAAPAPS 64
>AF106582-7|ABD94096.1| 806|Caenorhabditis elegans Hypothetical
protein W05F2.4b protein.
Length = 806
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 588 APFEE-TRADCGEGAPPPDPPTHSLPEPAS 502
+P +E T A +PPP PP+H LP+ S
Sbjct: 557 SPLQEVTYASLNSYSPPPPPPSHPLPQNGS 586
>AF106582-6|ABD94095.1| 834|Caenorhabditis elegans Hypothetical
protein W05F2.4a protein.
Length = 834
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 588 APFEE-TRADCGEGAPPPDPPTHSLPEPAS 502
+P +E T A +PPP PP+H LP+ S
Sbjct: 585 SPLQEVTYASLNSYSPPPPPPSHPLPQNGS 614
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -2
Query: 603 TAIPPAPFEETRADCGEGAPPPDP-PTHSLPEPA 505
TA PP P + APPP P P H++P PA
Sbjct: 48 TAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPA 81
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 600 AIPPAPFEETRADCGEGAPPPDP-PTHSLPEPA 505
A PPAP+ + APPP P P H++P PA
Sbjct: 96 APPPAPYPQHAVPAP--APPPAPYPQHAVPAPA 126
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -2
Query: 591 PAPFEETRADCGEGAPPPDP---PTHSLPEPA 505
PAP+ E A + APPP P P ++P PA
Sbjct: 35 PAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPA 66
>Z29094-13|CAI79130.1| 296|Caenorhabditis elegans Hypothetical
protein C07A9.13 protein.
Length = 296
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = +3
Query: 177 RGPGSPGRLYCLVDRQAFEDCNGRRATAHPMMSGH*CSRISAIKSTVEPLPSHWKSFGAR 356
+G SP + ++ + +C HPM + + +++ +P PS+W F +
Sbjct: 109 KGVNSPSFAFVILLKDLAVECKNDAKVPHPMR--YKSHVVCSVQGCTKPKPSNWPLFCVK 166
Query: 357 LKKDPS 374
L K S
Sbjct: 167 LPKGKS 172
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 600 AIPPAPFEETRADCGEGAPPPDPPTHSLPEPASTKRSA 487
A PA + A G APPP P + PEPA +A
Sbjct: 352 AAAPAGGYQGGAAAGAAAPPPAPAAAAAPEPAPAPAAA 389
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 558 GEGAPPPDPPTHSLPEPA 505
G+ APPP PP + P PA
Sbjct: 37 GDAAPPPPPPADAAPAPA 54
>AC006624-1|AAF39785.1| 73|Caenorhabditis elegans Hypothetical
protein C53D5.3 protein.
Length = 73
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 549 APPPDPPTHSLPEPASTKR 493
APPP PP+ S+P P+ R
Sbjct: 14 APPPPPPSSSIPAPSQPNR 32
>Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical
protein T05F1.11 protein.
Length = 676
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 577 FERRWRDGGEPRAQPVARRKHARRRK 654
+ERRWR E R + + R+K R+K
Sbjct: 421 YERRWRIEEEERLEEIRRKKEEERKK 446
>Z83228-2|CAB05733.1| 370|Caenorhabditis elegans Hypothetical
protein F52F12.2 protein.
Length = 370
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -2
Query: 612 TRLTAIPPAPFEETRADCGEGAPPPDPPTHSLPEPASTKRSARFADYTLL 463
T L P EET E PP+P + +PE + S F Y L
Sbjct: 318 TLLPTRSPKSREETPTRREEQQVPPNPSSSEVPETGDSANSQNFGGYLAL 367
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 594 PPAPFEETRADCGEGAPPPDPPTHSLPEP 508
PP P + + G G+PPP P S P P
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSPPPP 267
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 594 PPAPFEETRADCGEGAPPPDPPTHSLPEP 508
PP P + + G G+PPP P S P P
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSPPPP 288
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 594 PPAPFEETRADCGEGAPPPDPPTHSLPEP 508
PP P + + G G+PPP P S P P
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSPPPP 273
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 599 AVSRVPSPLHDGNTPVAENWCFTQVKVVKFSYMWTIN 709
A+ P+P T VAE W + + +K + WT+N
Sbjct: 111 ALLSAPNPEDPLATDVAEQWKTNEAEAIKTAKQWTMN 147
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,014,576
Number of Sequences: 27780
Number of extensions: 314906
Number of successful extensions: 1788
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1742
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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