Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1282
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 549 APPPDPPTHSLPEPA 505
           APPP PP+ S P+ A
Sbjct: 342 APPPPPPSSSGPDSA 356


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 594 PPAPFEETRADCGEGAPPPDPPTHSLPEPAS 502
           PP P +        GAPP   P+  +  PAS
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNPSQMMISPAS 69


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 333 HWKSFGARLKKDPS*RSG 386
           HW   G RL  +PS R G
Sbjct: 25  HWFRKGLRLHDNPSLREG 42


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +3

Query: 327 PSHWKSFGARLKKDPS*RSGNTVEEETSFQSRMIFPLNLSKSQSVTKVYNQQT 485
           P H       LKK P  R+ NT+  E     +M       ++Q   +   QQT
Sbjct: 379 PQHPDILRELLKKIPDLRTLNTLHSEKLLAFKMTEQQQQMQAQQQHQQQQQQT 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,351
Number of Sequences: 438
Number of extensions: 3773
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)