Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1282
(742 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g45688.1 68414.m05202 expressed protein 33 0.20
At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ b... 31 0.61
At5g66960.1 68418.m08442 prolyl oligopeptidase family protein si... 31 1.1
At4g20740.1 68417.m03014 pentatricopeptide (PPR) repeat-containi... 31 1.1
At3g12590.1 68416.m01568 expressed protein 31 1.1
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 30 1.9
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 29 3.2
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 29 3.2
At4g17280.1 68417.m02597 auxin-responsive family protein similar... 29 3.2
At3g47930.1 68416.m05226 L-galactono-1,4-lactone dehydrogenase, ... 29 3.2
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro... 28 5.7
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 28 5.7
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 28 5.7
At4g20730.1 68417.m03013 filament protein-related similar to Cyt... 28 7.5
At4g16140.1 68417.m02445 proline-rich family protein contains pr... 28 7.5
At4g00400.1 68417.m00054 phospholipid/glycerol acyltransferase f... 28 7.5
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ... 28 7.5
At3g50150.1 68416.m05482 expressed protein contains Pfam profile... 28 7.5
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 28 7.5
At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR... 28 7.5
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 28 7.5
At1g61080.1 68414.m06877 proline-rich family protein 28 7.5
At5g46780.2 68418.m05763 VQ motif-containing protein contains PF... 27 9.9
At5g46780.1 68418.m05762 VQ motif-containing protein contains PF... 27 9.9
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 27 9.9
At4g28365.1 68417.m04060 plastocyanin-like domain-containing pro... 27 9.9
At4g20510.1 68417.m02990 expressed protein 27 9.9
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 27 9.9
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family... 27 9.9
At1g04780.1 68414.m00474 ankyrin repeat family protein contains ... 27 9.9
>At1g45688.1 68414.m05202 expressed protein
Length = 342
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = -2
Query: 612 TRLTAIPPAPFEETRADCGEGAPPPDPPTHSLPEPASTKRSARFADYTL 466
T L PPAP + + G P PDPP P P + R Y L
Sbjct: 256 TLLPPAPPAPLPKPKKKKGAPVPIPDPPAPPAPVPMTLSFVVRSRAYVL 304
>At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ
boundaries domain protein 13 (LBD13) identical to LOB
DOMAIN 13 [Arabidopsis thaliana] GI:17227158 SP|Q9AT61
Length = 268
Score = 31.5 bits (68), Expect = 0.61
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = -2
Query: 681 TTLTCVKHQFSATGVFPS--CN--GLGTRLTAIPPAPFEET----RADCGEGAPPPDPPT 526
TT+T +++ F++T S C+ L + + PP P T R + APPP PP
Sbjct: 161 TTITSLQNNFNSTTTTSSVSCDQHALASAILLPPPPPPPPTPRPPRLLSSQPAPPPTPPV 220
Query: 525 HSLPEPASTKRSA 487
SLP P+ S+
Sbjct: 221 -SLPSPSMVVSSS 232
>At5g66960.1 68418.m08442 prolyl oligopeptidase family protein
similar to OpdB [Treponema denticola] GI:13786054;
contains Pfam profiles PF00326: prolyl oligopeptidase
family, PF02897: Prolyl oligopeptidase, N-terminal
beta-propeller domain
Length = 792
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 549 APPPDPPTHSLPEPASTKRSARFADYTLL*HFETWRGLEEK 427
+PPP PP +LP+P +S F D T + LE+K
Sbjct: 29 SPPPPPPPPALPKPPKKPQSFTFHDATWEDPYSWMSKLEDK 69
>At4g20740.1 68417.m03014 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 727
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 585 PFEETRADCGEGAPPPDPPTHSLPEPASTKRSARFADYTL 466
PF+ + D PPP PP+HS A+++R + A + L
Sbjct: 60 PFDLRKWDPETHLPPPSPPSHSTVISAASERLSPIARFVL 99
>At3g12590.1 68416.m01568 expressed protein
Length = 1162
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -2
Query: 642 GVFPSCNGLGTRLTAIPPAPFEETRADCGEGAPPPDPPTH-SLPEPASTKRSARFADY 472
G S + L + + PP P ADC +PPP H ++P A ++ DY
Sbjct: 20 GAAGSASRLRSSSSKKPPEPLRRAVADCLSSSPPPVNSHHGAIPSMAPSEALRNLRDY 77
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Frame = -2
Query: 594 PPAPF-EETRADCGEG----APPPDPPTHSLPEP 508
PP+P EET+ + +PPP PP HS P P
Sbjct: 626 PPSPSTEETKTTSPQSPPVHSPPPPPPVHSPPPP 659
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -2
Query: 603 TAIPPAPFEETRADCGEGAPPPDPP 529
TA PP P +TRA APPP PP
Sbjct: 774 TAPPPPPLGQTRA---PSAPPPPPP 795
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -2
Query: 612 TRLTAIPPAPFEETRADCGEGAPPPDPPTHSLPEP 508
T+ + PPAP PPP PP HS P P
Sbjct: 513 TKRRSPPPAPVNSPPPPV-YSPPPPPPPVHSPPPP 546
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -2
Query: 594 PPAPFEETRADCGEGAPPPDPPTHSLPEP 508
PP P PPP PP HS P P
Sbjct: 543 PPPPVHSPPPPPVYSPPPPPPPVHSPPPP 571
>At4g17280.1 68417.m02597 auxin-responsive family protein similar to
auxin-induced protein AIR12 (GI:11357190) [Arabidopsis
thaliana]
Length = 297
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 672 TCVKHQFSATGVFPSCNGL 616
TC K++FS+ VF SCN L
Sbjct: 33 TCSKYKFSSNNVFDSCNDL 51
>At3g47930.1 68416.m05226 L-galactono-1,4-lactone dehydrogenase,
putative strong similarity to L-galactono-1,4-lactone
dehydrogenase, Brassica oleracea, Z97060 [gi:2760543],
and gi:3986289 from Ipomea batatas
Length = 610
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Frame = -2
Query: 582 FEETRADCGEG---APPPDPPTHSLPEPASTKRSARFADY 472
F R C G PPP PP P P +T A+F Y
Sbjct: 29 FSPHRTLCTTGQTLTPPPPPPPRPPPPPPATASEAQFRKY 68
>At2g25050.1 68415.m02996 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 1111
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -2
Query: 606 LTAIPPAPFEETRADCGEGAPPPDPPTHSL---PEPASTKRS 490
+T+ P P + R PPP PP SL P P+ST S
Sbjct: 554 VTSSPLPPLKPLRILSRPPPPPPPPPISSLRSTPSPSSTSNS 595
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -2
Query: 594 PPAPFEETRADCGEG-APPPDPPTHSLPEPAST 499
PP FE E +PP PP LP PAS+
Sbjct: 120 PPEVFEPPPPPADEDESPPAPPPPEQLPPPASS 152
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 555 EGAPPPDPPTHSLPEPA 505
+ APPP PP S P PA
Sbjct: 34 DSAPPPSPPADSSPPPA 50
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 594 PPAPFEETRADCGEGAPPPDPPTHS 520
PP P A C PPP P +HS
Sbjct: 645 PPPPTRIPAAKCAPPPPPPPPTSHS 669
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -2
Query: 600 AIPPAPFEETRADCGEGAPPPDPPTHSLPEP 508
A PP P TR G PPP PP P P
Sbjct: 700 APPPLPPSSTR--LGAPPPPPPPPLSKTPAP 728
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 594 PPAPFEETRADCGEGAPPPDPP 529
PP P TR + APPP PP
Sbjct: 642 PPPPPPPTRIPAAKCAPPPPPP 663
>At4g20730.1 68417.m03013 filament protein-related similar to
Cytadherence high molecular weight protein 2 (SP:P47460)
[Mycoplasma genitalium]; similar to YEAST NUF1
protein (Spindle poly body spacer protein SPC110)
(SP:P32380) {Saccharomyces cerevisiae}; also
SP|Q9UKX2|MYH2_HUMAN Myosin heavy chain, skeletal
muscle, SP|P31732|OV71_ONCVO Muscle cell intermediate
filament protein SP|P12882|MYH1_HUMAN Myosin heavy
chain, skeletal muscle,. SP|Q17107|AV71_ACAVI Muscle
cell intermediate filament protein
Length = 800
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 594 PPAPFEETRADCGEGAPPPDPPTHSLP 514
PPAP EETR GE A +PP ++ P
Sbjct: 351 PPAPIEETRPLDGEAA-TSNPPVNAGP 376
>At4g16140.1 68417.m02445 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 164
Score = 27.9 bits (59), Expect = 7.5
Identities = 24/106 (22%), Positives = 38/106 (35%)
Frame = -2
Query: 735 ISSLQKLKLFIVHM*LNFTTLTCVKHQFSATGVFPSCNGLGTRLTAIPPAPFEETRADCG 556
+ + + LF+ FTT Q + + SC+ + PP P +
Sbjct: 1 METFRTFHLFLFFFFFTFTTTLTSPSQIADCTMCTSCDNPCQPNPSPPPPPSNPS----- 55
Query: 555 EGAPPPDPPTHSLPEPASTKRSARFADYTLL*HFETWRGLEEKSSG 418
PPP P T + P P S+ + Y ++R SSG
Sbjct: 56 --PPPPSPTTTACPPPPSSSGGGPYYYYPPASQSGSYRPPPSSSSG 99
>At4g00400.1 68417.m00054 phospholipid/glycerol acyltransferase
family protein
Length = 500
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -1
Query: 376 YEGSFFNRAPNDFQCEGSGSTVLLIADILEHQ*PLIIGWAVARL 245
YE +F +R P + G G T + +A+ ++ ++G+ L
Sbjct: 433 YEATFLDRLPEEMTVNGGGKTPIEVANYVQKVIGAVLGFECTEL 476
>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 812
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 265 GW-AVARLPLQSSKACRSTRQYKRPGEPGPRA 173
GW A+ R P+Q+S + +R + R +P P A
Sbjct: 477 GWPAIGRTPVQASSSSVQSRSHNRVSQPRPLA 508
>At3g50150.1 68416.m05482 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function; expression
supported by MPSS
Length = 509
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 119 EEYYLKVKEKRQRASTSDSTRSW 187
EE+ + +K+K ++A + D+T SW
Sbjct: 65 EEWVISIKDKMEKALSYDATNSW 87
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -2
Query: 594 PPAPFEETRADCGEGAPPPDPPTHSLPEP 508
PP P +PPP PP HS P P
Sbjct: 520 PPPPVYSPPPPPPVYSPPPPPPVHSPPPP 548
>At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1215
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 399 PLPCFPSAMRGPFLIELRMTSS 334
P+ CFPS FL+EL M S
Sbjct: 640 PMTCFPSKFNPEFLVELNMWGS 661
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Frame = -2
Query: 654 FSATGVFPSCNGLGTRLTAIPPAPFEETRADCGEGAPPPDPPTHS-LPEPASTKRSARFA 478
F AT PS + A PP P + PPP PP + P P S++ S
Sbjct: 467 FRATPPPPSSK-MSPSFRATPPPPSSKMSPSVKAYPPPPPPPEYEPSPPPPSSEMSPSVR 525
Query: 477 DY 472
Y
Sbjct: 526 AY 527
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 600 AIPPAPFEETRADCGEGAPPPDPPTHSLPEP 508
A PP P RA PPP P T + P P
Sbjct: 521 AAPPPPPPPPRAAVAPPPPPPPPGTAAAPPP 551
>At5g46780.2 68418.m05763 VQ motif-containing protein contains
PF05678: VQ motif
Length = 237
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 612 TRLTAIPPAPFEETRADCGEGAPPPDPPTHSLP 514
+RL + PAP T+ + PPP PP S+P
Sbjct: 85 SRLVKVRPAPL--TQLNHPPPPPPPPPPVQSVP 115
>At5g46780.1 68418.m05762 VQ motif-containing protein contains
PF05678: VQ motif
Length = 237
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 612 TRLTAIPPAPFEETRADCGEGAPPPDPPTHSLP 514
+RL + PAP T+ + PPP PP S+P
Sbjct: 85 SRLVKVRPAPL--TQLNHPPPPPPPPPPVQSVP 115
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 399 PLPCFPSAMRGPFLIELRMTSS 334
P+ C PS + FLIEL +T S
Sbjct: 642 PMTCLPSTVNVEFLIELNLTHS 663
>At4g28365.1 68417.m04060 plastocyanin-like domain-containing
protein
Length = 199
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -2
Query: 675 LTCVKHQFSATGVFPSCNGLGTRLTAIPPAPFEETRADCGEGAPPPDPPT 526
L+ V H S PS + + L++ P+P E +D P P P T
Sbjct: 127 LSTVHHSHSPRHTSPSPSPVHQELSSPGPSPGVEPSSDSNSRVPAPGPAT 176
>At4g20510.1 68417.m02990 expressed protein
Length = 413
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 594 PPAPFEETRADCGEGAPPPDPPTHSLP 514
PPAP EETR GE A +PP ++ P
Sbjct: 21 PPAPIEETRPLDGEAA-TSNPPINAGP 46
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 594 PPAPFEETRADCGEGAPPPDPPTHSLPEP 508
PP P + +PPP PT S+P P
Sbjct: 101 PPTPTPSVPSPTPPVSPPPPTPTPSVPSP 129
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 594 PPAPFEETRADCGEGAPPPDPPTHSLPEP 508
PP P + +PPP PT S+P P
Sbjct: 119 PPTPTPSVPSPTPPVSPPPPTPTPSVPSP 147
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 594 PPAPFEETRADCGEGAPPPDPPTHSLPEP 508
PP P + +PPP PT S+P P
Sbjct: 137 PPTPTPSVPSPTPPVSPPPPTPTPSVPSP 165
>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 554
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 600 AIPPAPFEETRADCGEGAPPPDPP 529
A+PP P A G APPP PP
Sbjct: 258 ALPPPPPLPMAAGKGVAAPPPPPP 281
>At1g04780.1 68414.m00474 ankyrin repeat family protein contains
Pfam PF00023: Ankyrin repeat
Length = 664
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 131 LKVKEKRQRASTSDSTRSWFSWTLVLSRRPTS 226
+K + + S+S+ + SWF W S+RP++
Sbjct: 581 VKNSPREETQSSSNPSSSWFQWIKTPSQRPST 612
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,149,609
Number of Sequences: 28952
Number of extensions: 294486
Number of successful extensions: 1499
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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