Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1281X
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    32   0.038
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    28   0.47 
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    27   1.4  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   4.4  
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    25   4.4  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   4.4  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   5.8  

>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 31.9 bits (69), Expect = 0.038
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 93  NITTLKQGYFTSFYHGTIHH*LFIHPQ 13
           N TT+ + YF++F+ G IH  LF +P+
Sbjct: 31  NNTTISKPYFSTFFEGGIHSLLFFYPK 57


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 28.3 bits (60), Expect = 0.47
 Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
 Frame = -3

Query: 368  VSHAAFLASLIAFLRVSASWRRLSSSFM--INTRVTHS 261
            ++HA  L+S++ +L+VS   RR+++  +  IN R+T S
Sbjct: 1120 INHADILSSILDYLQVSKDKRRMATHILGQINQRLTLS 1157


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 234 APRTYNTQRTDPSVSNVPS 178
           +P  Y+  RT+P+V+N+PS
Sbjct: 393 SPEGYDNNRTNPTVNNLPS 411


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 161 FSGDFYITIKIG*PLFGTFCIFSISPH*NK-DISQVFITEQSTISF 27
           FSG  ++ +K+G PLF    + +     N  +I+Q F+  Q+  +F
Sbjct: 308 FSGTVFMRVKVGIPLFERLKVGTNKVKNNSVNIAQSFLEPQTRSTF 353


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 124 NHFLAHFVSFQYHHTKTRIFHKF-LSRNNPP 35
           N  + H ++  Y   +TRIFH+  L+ ++PP
Sbjct: 372 NRGVTHCITGAYRDDQTRIFHQCNLAASHPP 402


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 362 HAAFLASLIAFLRVSASWRRLSSSFMINTRV 270
           H    +S+IAF++ +  WR L SS  I   V
Sbjct: 663 HDESSSSMIAFVKPNPVWRNLGSSLHIEKLV 693


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 252 TDDRQPAPRTYNTQRTDPSVSNVP 181
           T  R P PR  NTQ    S+S  P
Sbjct: 517 TSPRTPLPRVKNTQNPSRSISAEP 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,594,860
Number of Sequences: 5004
Number of extensions: 29170
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)