Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1281X
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0079 - 13284869-13284929,13285518-13285639,13285749-132858...    27   4.2  
03_06_0128 - 31879286-31879381,31879463-31879574,31879680-318797...    27   5.6  
08_02_0627 + 19449196-19449651,19449723-19449861,19450260-194503...    27   7.3  
08_02_0293 - 15424397-15428041                                         26   9.7  
01_07_0022 - 40543912-40544004,40545060-40545229,40545850-405459...    26   9.7  

>11_04_0079 -
           13284869-13284929,13285518-13285639,13285749-13285820,
           13286048-13286200,13289510-13289709,13289745-13289947,
           13289991-13290181
          Length = 333

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 100 SFQYHHTKTRIFHKFLSRNNPPLAFHTP 17
           S QYHH  T   ++ L  + PP  F++P
Sbjct: 296 SIQYHHNVTLNGYRALVYSGPPFPFNSP 323


>03_06_0128 -
           31879286-31879381,31879463-31879574,31879680-31879747,
           31880959-31881072,31881207-31881247,31881340-31881393,
           31881785-31881866,31882063-31882116
          Length = 206

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 301 CPARS*LIHASHTAHVNRRSTTGAAHVQHATHRSFCQQ-CPFD 176
           CPA++  I A      +RR+T     +    +  FCQ+ CP D
Sbjct: 117 CPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVD 159


>08_02_0627 +
           19449196-19449651,19449723-19449861,19450260-19450381,
           19450685-19450888,19450981-19451040,19451628-19451820,
           19451880-19451998,19452189-19452413,19452534-19452728
          Length = 570

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 279 YTRHTQLT*TDDRQPAPRTYNTQRTDP 199
           ++RH+ L   DDR P+P T  + +  P
Sbjct: 48  FSRHSHLLPADDRSPSPSTRGSVQPPP 74


>08_02_0293 - 15424397-15428041
          Length = 1214

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 172 RSSDFRAISISPLRLDNHFLAHFVSFQYHHTKTRIFHKFLSRNNP 38
           R S F A+++S L L +  + H+  +++H  KT+      S + P
Sbjct: 827 RQSVFLAVTLSVLILFSLLIIHYKLWKFHKNKTKEIQAGCSESLP 871


>01_07_0022 -
           40543912-40544004,40545060-40545229,40545850-40545971,
           40549272-40550909,40553212-40553720
          Length = 843

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 213 QRTDPSVSNVPSIDAPAIFGRFLYHH*DWITTFWHILYLFNI 88
           ++  PSVSN+ ++ +  + GR   H  D    FW I  L ++
Sbjct: 650 EKLPPSVSNLVNLQSLILKGRNAGHVLDVTAAFWRITTLRHV 691


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,637,627
Number of Sequences: 37544
Number of extensions: 197233
Number of successful extensions: 448
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)