Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1281X
(403 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30) 47 5e-06
SB_57141| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_27457| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-17) 27 5.7
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40) 27 5.7
SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 10.0
SB_14238| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 10.0
SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027) 26 10.0
SB_42993| Best HMM Match : RnaseH (HMM E-Value=1.3) 26 10.0
SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18) 26 10.0
SB_9467| Best HMM Match : PAN (HMM E-Value=3e-05) 26 10.0
SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0) 26 10.0
>SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30)
Length = 1292
Score = 47.2 bits (107), Expect = 5e-06
Identities = 21/38 (55%), Positives = 30/38 (78%)
Frame = +1
Query: 286 MNELDSLRXDAETLKNAIRDARKAACDTSLAQANSNLE 399
M+EL+ LR ++E LK IRDARK A DT+LAQ ++N++
Sbjct: 1 MSELEQLRQESEALKCQIRDARKIAADTTLAQVSANID 38
>SB_57141| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -1
Query: 265 TAHVNRRS---TTGAAHVQHATHRSFCQQCPFDRRSSD 161
T HVNRRS +T A H ++A+ R C P DR+ +
Sbjct: 155 TPHVNRRSKDASTRARHSENASERGHC--TPTDRKDDN 190
>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/67 (22%), Positives = 30/67 (44%)
Frame = -1
Query: 277 HASHTAHVNRRSTTGAAHVQHATHRSFCQQCPFDRRSSDFRAISISPLRLDNHFLAHFVS 98
H++ T + + T +H Q H + C S+ + +++ ++ +H +
Sbjct: 1162 HSTITQNAITQPVTVPSHNQSQYHHTKCHH--MTSHSTITQPVTVQSHKMPSHKMRSHNH 1219
Query: 97 FQYHHTK 77
QYHHTK
Sbjct: 1220 SQYHHTK 1226
>SB_27457| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-17)
Length = 352
Score = 27.1 bits (57), Expect = 5.7
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 237 PAPRTYNTQRTDPSVSNVPS-IDAPAIFGRFLYHH*DWITTFWH 109
PA T N ++T S++ V + I AP IFG F+ WIT H
Sbjct: 21 PADYTKNFKQTYVSLAVVNALIAAPTIFGNFVIILAVWITPALH 64
>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
Length = 2057
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 305 YAXMRKPLKTLLEMRG 352
YA MRKPL TLL+ +G
Sbjct: 513 YAAMRKPLATLLQRKG 528
>SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1153
Score = 26.2 bits (55), Expect = 10.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 264 VCDACINHERAGQPTPXCGNP 326
+CD I H R G P+ G+P
Sbjct: 1086 LCDKIIGHARVGAPSKTAGSP 1106
>SB_14238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 26.2 bits (55), Expect = 10.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -1
Query: 247 RSTTGAAHVQHATHRSFCQQCP--FD-RRSSDFRAISISPLRL 128
R T ++H + CQQCP +D ++S D R SI P L
Sbjct: 678 RDTVYDKCIKHTHTGNMCQQCPTTYDSQQSDDVRRRSIRPYDL 720
>SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)
Length = 466
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 274 ASHTAHVNRRSTTGAAHVQHATH-RSFCQ 191
ASHT H + S TG H+Q+ H R C+
Sbjct: 285 ASHTGHAEQASHTG--HMQNGRHIRDICR 311
>SB_42993| Best HMM Match : RnaseH (HMM E-Value=1.3)
Length = 349
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = -1
Query: 265 TAHVNRRS---TTGAAHVQHATHRSFC 194
T HVNRRS +T A H ++A+ R C
Sbjct: 272 TPHVNRRSKDASTRARHSENASERGHC 298
>SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)
Length = 1051
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 342 RCEESGMRHVAGPGQLEPGA 401
RCE SG H A P PGA
Sbjct: 489 RCELSGATHFAFPAHFTPGA 508
>SB_9467| Best HMM Match : PAN (HMM E-Value=3e-05)
Length = 168
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 342 RCEESGMRHVAGPGQLEPGA 401
RCE SG H A P PGA
Sbjct: 70 RCELSGATHFAFPAHFTPGA 89
>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 1705
Score = 26.2 bits (55), Expect = 10.0
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = -1
Query: 301 CPARS*LIHASHTAHVNRRSTTGAAHVQHATHRSFCQQCPFDRRSS--DFRAISISPLR- 131
C S HA T S T A +V +A + +FCQ+ FDR + D L
Sbjct: 45 CEVGSHNCHADATCINTDGSFTCACNVGYAGNGAFCQE-GFDRENPTLDINECQRDALAP 103
Query: 130 LDNHFLAHFVSFQYHHTKTR 71
+ NH+ AH H T T+
Sbjct: 104 IHNHY-AHNCHVDAHCTNTK 122
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,350,856
Number of Sequences: 59808
Number of extensions: 241058
Number of successful extensions: 621
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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