Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1281X
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49127-9|CAA88948.1|  340|Caenorhabditis elegans Hypothetical pr...    52   2e-07
X17497-1|CAA35532.1|  340|Caenorhabditis elegans G-protein protein.    52   2e-07
AF291846-1|AAK55963.1|  340|Caenorhabditis elegans heterotrimeri...    52   2e-07
Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical p...    30   0.71 

>Z49127-9|CAA88948.1|  340|Caenorhabditis elegans Hypothetical
           protein F13D12.7 protein.
          Length = 340

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 25/39 (64%), Positives = 31/39 (79%)
 Frame = +1

Query: 286 MNELDSLRXDAETLKNAIRDARKAACDTSLAQANSNLEP 402
           M+ELD LR +AE LK+ IR+ARK+A DT+LA   SNLEP
Sbjct: 1   MSELDQLRQEAEQLKSQIREARKSANDTTLATVASNLEP 39


>X17497-1|CAA35532.1|  340|Caenorhabditis elegans G-protein protein.
          Length = 340

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 25/39 (64%), Positives = 31/39 (79%)
 Frame = +1

Query: 286 MNELDSLRXDAETLKNAIRDARKAACDTSLAQANSNLEP 402
           M+ELD LR +AE LK+ IR+ARK+A DT+LA   SNLEP
Sbjct: 1   MSELDQLRQEAEQLKSQIREARKSANDTTLATVASNLEP 39


>AF291846-1|AAK55963.1|  340|Caenorhabditis elegans heterotrimeric G
           protein beta subunit1 protein.
          Length = 340

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 25/39 (64%), Positives = 31/39 (79%)
 Frame = +1

Query: 286 MNELDSLRXDAETLKNAIRDARKAACDTSLAQANSNLEP 402
           M+ELD LR +AE LK+ IR+ARK+A DT+LA   SNLEP
Sbjct: 1   MSELDQLRQEAEQLKSQIREARKSANDTTLATVASNLEP 39


>Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical
           protein F14F8.13 protein.
          Length = 328

 Score = 29.9 bits (64), Expect = 0.71
 Identities = 11/46 (23%), Positives = 30/46 (65%)
 Frame = -3

Query: 188 MSLRSTLQRFSGDFYITIKIG*PLFGTFCIFSISPH*NKDISQVFI 51
           ++++S++ ++   F + I +   +FGT C+ S++ + N+++S+  I
Sbjct: 142 LNIQSSVHKYLPHFTLCIILKDAVFGTACVLSLAKYLNEEVSEFCI 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,008,746
Number of Sequences: 27780
Number of extensions: 174273
Number of successful extensions: 452
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)