Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1281X
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   0.75 
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   4.0  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   4.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   4.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.9  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   6.9  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    20   9.2  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           20   9.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           20   9.2  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 258 T*TDDRQPAPRTYNTQRTDPSVSNVPSI 175
           T T+D+  + + Y T  + PS  N+PS+
Sbjct: 368 TNTNDQDYSSQNYLTVHSFPSTLNIPSV 395


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 4   GPILRVYEKLMVD 42
           GP+LR++ K M+D
Sbjct: 227 GPLLRIFTKHMLD 239



 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 126 ITTFWHILYLFNITTLKQGY 67
           ITT W   Y+++    +Q Y
Sbjct: 168 ITTPWDYYYIYHTLVAEQSY 187


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 4   GPILRVYEKLMVD 42
           GP+LR++ K M+D
Sbjct: 242 GPLLRIFTKHMLD 254



 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 126 ITTFWHILYLFNITTLKQGY 67
           ITT W   Y+++    +Q Y
Sbjct: 183 ITTPWDYYYIYHTLVAEQSY 202


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 220 QHATHRSFCQQCPFDRRSSDF 158
           +H      C+ CP   +SSD+
Sbjct: 271 KHEAGSHSCEACPAHSKSSDY 291


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 400 APGSSWPGPATCR 362
           +PG +WPG +  R
Sbjct: 915 SPGRAWPGDSDIR 927


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 126 ITTFWHILYLFNITTLKQGY 67
           ITT W   Y+++    +Q Y
Sbjct: 71  ITTPWDYYYIYHTLVAEQSY 90


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -1

Query: 187 CPFDRRSSDFRAISISPLRLDNHFLAHFVSFQYH 86
           CP        R +   P R     LA+F+ F Y+
Sbjct: 261 CPTRNVKEMIRCLRYRPARAIVETLANFMRFYYN 294


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -1

Query: 187 CPFDRRSSDFRAISISPLRLDNHFLAHFVSFQYH 86
           CP        R +   P R     LA+F+ F Y+
Sbjct: 132 CPTRNVKEMIRCLRYRPARAIVETLANFMRFYYN 165


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -1

Query: 187 CPFDRRSSDFRAISISPLRLDNHFLAHFVSFQYH 86
           CP        R +   P R     LA+F+ F Y+
Sbjct: 261 CPTRNVKEMIRCLRYRPARAIVETLANFMRFYYN 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,050
Number of Sequences: 438
Number of extensions: 1902
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)