Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1281X
         (403 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa s...    27   4.7  
At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa s...    27   4.7  
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ...    26   8.2  

>At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial (TYKY) identical to SP|Q42599
           NADH-ubiquinone oxidoreductase 23 kDa subunit,
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
           (CI-28.5KD) {Arabidopsis thaliana}
          Length = 222

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 301 CPARS*LIHASHTAHVNRRSTTGAAHVQHATHRSFCQQ-CPFD 176
           CPA++  I A      +RR+T     +    +  FCQ+ CP D
Sbjct: 133 CPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVD 175


>At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial, putative very strong similarity
           to SP|Q42599 NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial precursor (EC 1.6.5.3) (EC
           1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
           (CI-28.5KD) {Arabidopsis thaliana}; contains Pfam
           profile PF00037: iron-sulfur cluster-binding protein
          Length = 222

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 301 CPARS*LIHASHTAHVNRRSTTGAAHVQHATHRSFCQQ-CPFD 176
           CPA++  I A      +RR+T     +    +  FCQ+ CP D
Sbjct: 133 CPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVD 175


>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 310

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 259 ELCVTRVL-IMNELDSLRXDAETLK 330
           ELC+ R+  +M ELDSLR + ++L+
Sbjct: 97  ELCLNRLQSLMTELDSLRHENDSLR 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,433,714
Number of Sequences: 28952
Number of extensions: 153269
Number of successful extensions: 337
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)