Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1280
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    39   5e-05
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    26   0.38 
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    26   0.38 
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    26   0.50 
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          25   1.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.6  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              22   6.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.2  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 39.1 bits (87), Expect = 5e-05
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +3

Query: 618 LGVEDFEPLKVIGRGAFGEVRLVQ-KKDTGHVYAMKILRKADMLEKEQ 758
           L ++D  PL  +G G FG V LVQ   D+   +A+K ++KA ++E  Q
Sbjct: 362 LRLQDLRPLATLGVGGFGRVELVQIAGDSSRSFALKQMKKAQIVETRQ 409



 Score = 29.1 bits (62), Expect = 0.054
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +2

Query: 764 HVRAERDILVEADHQWVVKMYYSFQD 841
           H+ +E+ I+ EAD  +VVK++ +F+D
Sbjct: 412 HIMSEKRIMGEADCDFVVKLFKTFKD 437


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 317 RALRWPQILHHQHPSRQ 367
           RAL++P ++H  HP RQ
Sbjct: 13  RALKYPMVVHVYHPYRQ 29


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 317 RALRWPQILHHQHPSRQ 367
           RAL++P ++H  HP RQ
Sbjct: 13  RALKYPMVVHVYHPYRQ 29


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 681 LVQKKDTGHVYAMKILRKADMLEKEQV 761
           L ++K T  +YA+KIL+K  +++ + V
Sbjct: 2   LAERKGTDELYAIKILKKDIIIQDDDV 28


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 653 RKRCLRRSKTCAEERHRTRLRHEDTAESRYAGERT 757
           R R  +R+ +C   R+   LRHED    R  GER+
Sbjct: 220 RSRSFQRTSSC-HSRYED-LRHEDRNSYRNDGERS 252


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 406 SGHTLDKATKAKVTLE 453
           S HTLD A + KVT+E
Sbjct: 498 STHTLDVAWRRKVTIE 513


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 406 SGHTLDKATKAKVTLE 453
           S HTLD A + KVT+E
Sbjct: 536 STHTLDVAWRRKVTIE 551


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 650 YRKRCLRRSKTCAEERHRT 706
           YRK+C+  +KT  E+   T
Sbjct: 39  YRKKCIGETKTTIEDVEAT 57


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 679  LTSPKAPLPITFSGSK 632
            LTSP  PL I+ +GS+
Sbjct: 1394 LTSPPTPLSISRAGSR 1409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,072
Number of Sequences: 438
Number of extensions: 4894
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)