Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1278
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 29 0.40
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 28 0.93
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 28 1.2
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 27 2.1
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.8
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 3.7
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb... 26 3.7
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 26 5.0
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb... 25 6.5
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 25 6.5
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 8.7
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 8.7
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 29.5 bits (63), Expect = 0.40
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +1
Query: 25 LSSPASRQSSEDNATTANQPTMWLGTEDGCIHVYNCMDNIRIKKNKVKLQHN--SGVHSI 198
LS S S + T A+ ++++G DGCI + + + N K ++ QH+ S V ++
Sbjct: 232 LSPIRSHDFSIETITRADSDSLYVGGSDGCIRLLHILPN---KYERIIGQHSSRSTVDAV 288
Query: 199 -VFVEGKVFVALGNGDLVVY 255
V EG V+ +L +
Sbjct: 289 DVTTEGNFLVSCSGTELAFW 308
>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 663
Score = 28.3 bits (60), Expect = 0.93
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 264 IDGSWTERSTISVGTGSTPVSSMLLSGGKL 353
+ GSW STI G S+ +SS++ S G +
Sbjct: 401 VAGSWRRASTIEKGVSSSELSSIVSSTGSI 430
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 170 NLTLFFLILILSMQLYTWMQPSSVPSHIVGWLAVVA 63
+L+L F + L+ L+T + S+P HI GWL+ A
Sbjct: 1003 SLSLPFAVYALAF-LFTGISSMSLPYHIRGWLSYAA 1037
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +3
Query: 276 WTERSTISVG---TGSTPVSSMLLSGGKLWCATHASIKIINPHTLQVDETFQISSETKPI 446
W E G T S PVSS+ + LW A + T +++ I E + +
Sbjct: 39 WNENRLYDYGSKSTMSLPVSSLFPALQTLWIGVVADCSYVTHFTSRMEAKKHIFQEFEGV 98
Query: 447 SHMAVAGVNIWLSLHN 494
S + NI + +H+
Sbjct: 99 STLYEDSFNINVQIHS 114
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 273 SWTERSTISVGTGSTPVSSMLLSGGKL 353
+W S+ + T STP+SS S G L
Sbjct: 204 NWNSSSSFTSSTSSTPISSSYSSSGTL 230
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 190 HSIVFVEGKVFVALGNGDLVVYVGTLMDLGL 282
HS+ V+GK+FV G+ D G L DL L
Sbjct: 251 HSVTLVQGKIFVHGGHND----TGPLSDLWL 277
>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 209
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 542 RRAARECSYCSTQLRRVVQREPYVDARDRHVANWLRF 432
R AR+ + RRV + + + RD V NW F
Sbjct: 153 REQARQDEIARERKRRVESEKVWEETRDNRVGNWQDF 189
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Frame = -2
Query: 299 ADSATFSPRSI----NVPTYTTRSPFPSATNTF 213
AD A FSP V ++T S F SATN+F
Sbjct: 569 ADGAPFSPPKYLGAGEVTSFTKSSTFTSATNSF 601
>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 178
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 347 PSREQHAAHRSAAGTNADSATFSPRSINV 261
PS E+ RSA+ + SAT +P+ +++
Sbjct: 87 PSNEEQGHQRSASHGSTSSATSTPKRLSI 115
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Frame = -3
Query: 286 RSVQDPSMSRHTPRDHHF-------LVPQTPSPPRILWNEPLN 179
R+V+DPS R H F ++P+TP P R P+N
Sbjct: 283 RAVKDPSKPRWMDASHDFGREATPEILPKTPIPKRKPHKVPMN 325
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +1
Query: 7 RSIFGTLSSPASRQSSEDNATTANQPTMWLGTED 108
R ++ T P S +N +T+N P G+E+
Sbjct: 121 RCVYSTKQPPQSADKQVENTSTSNPPVSVEGSEN 154
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 501 QLRATIRTLASSSPRSTSLPQVQQDVARL 587
QLRA + L S++P+ST Q + ++ L
Sbjct: 1074 QLRARYKNLQSNTPQSTQSGQYESEIKGL 1102
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,301
Number of Sequences: 5004
Number of extensions: 61474
Number of successful extensions: 216
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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