Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1278
(609 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0481 + 14556223-14556762,14556848-14556928,14559532-145597... 31 0.94
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008... 30 1.2
02_05_0365 - 28309587-28310132 30 1.2
12_01_0177 - 1312229-1312498,1314758-1315630,1315729-1315885,131... 30 1.6
11_01_0176 - 1403284-1403553,1404313-1404468,1404569-1404787,140... 30 1.6
02_05_0817 + 31994241-31995908 29 2.2
05_05_0272 - 23738514-23738817,23739382-23740748 29 2.9
06_03_1310 + 29238644-29240260 29 3.8
12_02_0188 - 15158824-15159215,15159299-15159809,15159885-151600... 28 5.0
05_03_0637 - 16465433-16466242 28 5.0
12_02_0971 + 24949137-24950534 28 6.7
12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156 28 6.7
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 28 6.7
03_02_0502 - 8934646-8934834,8934974-8935121,8935228-8935304,893... 28 6.7
01_07_0303 + 42615578-42615709,42616273-42616312,42616393-426164... 28 6.7
01_01_0166 + 1412918-1413309,1413845-1414006,1414534-1414720,141... 28 6.7
07_03_0172 + 14697741-14697869,14697878-14697998,14698134-146982... 27 8.8
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 27 8.8
>05_03_0481 +
14556223-14556762,14556848-14556928,14559532-14559798,
14559933-14559992,14560811-14560942,14561026-14561199,
14562769-14562919,14563651-14563790,14565656-14565787,
14565866-14566000,14566098-14566304,14567376-14567540
Length = 727
Score = 30.7 bits (66), Expect = 0.94
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 91 WLGTED-GCIHVYNCMDNIRIKKNKVKLQHNSGVHSIVFVEGKVFVALGNGDLVVYVGTL 267
W T D G H C++ I KK+ VKLQH V GKV AL + V +
Sbjct: 567 WFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSL-----GKVESALTTSNYVDSIMVY 621
Query: 268 MDLGLNVALSALVPA 312
D N ++ +VPA
Sbjct: 622 ADPFHNYCVALVVPA 636
>05_05_0042 - 21798255-21798871,21799400-21799777,21799861-21800820,
21800918-21800957,21801471-21801766,21802696-21802774,
21803013-21803100,21803189-21803273,21803364-21803625,
21803720-21805027,21806187-21806393,21807288-21807519,
21808267-21808353,21808427-21808735,21808879-21808957,
21809788-21809867,21809952-21810029,21810744-21810831,
21811102-21811241,21811342-21811415,21812043-21812125,
21812403-21812516,21813975-21814136,21814377-21814641
Length = 2036
Score = 30.3 bits (65), Expect = 1.2
Identities = 29/107 (27%), Positives = 49/107 (45%)
Frame = +3
Query: 267 DGSWTERSTISVGTGSTPVSSMLLSGGKLWCATHASIKIINPHTLQVDETFQISSETKPI 446
+G+ T S G TPV S+ S++ ++P TLQ+ ++SE+ P+
Sbjct: 1833 EGNQTSSGPSSYLEGFTPVKSIGSMSASYLLVPSPSMRYLSPATLQLPTC--LTSESPPL 1890
Query: 447 SHMAVAGVNIWLSLHNAAQLRATIRTLASSSPRSTSLPQVQQDVARL 587
+H+ LH+ + T LA S ++P V++D ARL
Sbjct: 1891 AHL----------LHS----KGTAIPLAMGYVVSKAVPPVRKDSARL 1923
>02_05_0365 - 28309587-28310132
Length = 181
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 364 PTPRSRSSILTHYRWTKHS-K*VQKRSQLATWRSRASTY 477
P P +R+S++ WT+ S K ++R +W+ R Y
Sbjct: 44 PVPSNRASLVVRAAWTRRSRKEAEERPNRKSWKQRTDMY 82
>12_01_0177 -
1312229-1312498,1314758-1315630,1315729-1315885,
1316207-1316247
Length = 446
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 490 TTRRNCVLQYEHSRAARRDQHHFRKFSK 573
T +RNC++ + RR QH+F+K S+
Sbjct: 19 TAKRNCIICGQRISKRRRTQHNFQKISR 46
>11_01_0176 -
1403284-1403553,1404313-1404468,1404569-1404787,
1405198-1405440,1405539-1405695,1406186-1406226
Length = 361
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 490 TTRRNCVLQYEHSRAARRDQHHFRKFSK 573
T +RNC++ + RR QH+F+K S+
Sbjct: 19 TAKRNCIICGQRISKRRRTQHNFQKISR 46
>02_05_0817 + 31994241-31995908
Length = 555
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = -2
Query: 407 HL*CVRIDDLDRGVGRAPKLPSREQHAAHRSAAGTNADSATFSPRSINVPTYTTRSPFPS 228
HL +R+ L R + AP H+A+RS+ N S PR +++PT R S
Sbjct: 5 HL-ALRLRHLRRLLAVAPLSSLAAAHSANRSSPRLNPTSVPPPPRQLHLPTLQARR-LCS 62
Query: 227 ATNTFPSTNTME 192
T+ TN +
Sbjct: 63 TTHVVLPTNLQD 74
>05_05_0272 - 23738514-23738817,23739382-23740748
Length = 556
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 423 ISSETKPISHMAVAGVNIWLSLHNAAQLRATIRTLASSSPRSTSLPQ 563
+ ++ KP + AVA +H A + A IR SS+P S ++P+
Sbjct: 272 VDADQKPGDYYAVASTRF---IHEAKSVSAVIRYAGSSTPPSPAVPE 315
>06_03_1310 + 29238644-29240260
Length = 538
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 253 TPRDHHFLVPQTP-SPPRILWNEP 185
TP HH VP TP SPP W+ P
Sbjct: 465 TPPGHHAPVPGTPSSPPSSSWSPP 488
>12_02_0188 -
15158824-15159215,15159299-15159809,15159885-15160015,
15160107-15160310,15160385-15161066,15161158-15161414,
15161491-15161631,15161731-15162136
Length = 907
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 401 TGGRNIPNKFRNEAN*PHGGRGRQHMALAAQRGATACYNTNTREQL 538
+GG + P +F EA+ H + R H A ++QR + + R+ L
Sbjct: 767 SGGHHSPIQFTGEADFTHATQDRDHGAPSSQRTTVSPSDQQQRQHL 812
>05_03_0637 - 16465433-16466242
Length = 269
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 256 HTPRDHHFLVPQTPSPPRILW 194
H P HH L PQ P PP L+
Sbjct: 154 HQPFHHHLLQPQPPPPPPPLY 174
>12_02_0971 + 24949137-24950534
Length = 465
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 503 LRRVVQREPYVDARDRHVANWLRF*TYLEC 414
LR V+ YV+ R RH A WLR + C
Sbjct: 180 LRSAVRPSRYVETRRRHSALWLRHFDAVSC 209
>12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156
Length = 598
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 184 GVHSIVFVEGKVFVALGNGDLVVY 255
G H + F +GKV+ G GDL +
Sbjct: 121 GYHDMAFHDGKVYTVAGRGDLFAH 144
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 261 DIDGSWTERSTISVGTGSTPVSSMLLS 341
D GS TE+ T+S+ ++S+LLS
Sbjct: 2710 DFHGSMTEQRTVSISASKRAINSLLLS 2736
>03_02_0502 -
8934646-8934834,8934974-8935121,8935228-8935304,
8935427-8935497,8935594-8935680,8935852-8936316,
8936406-8936880
Length = 503
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 271 PSMSRHTPRDHHFLVPQTPSPPR 203
P +++ P DH+F+ Q P+PP+
Sbjct: 165 PFVAQQPPSDHYFIQHQHPTPPQ 187
>01_07_0303 +
42615578-42615709,42616273-42616312,42616393-42616477,
42616634-42616813,42618274-42618354,42618890-42619011,
42619867-42620723,42621656-42621897,42622107-42622200,
42622306-42622476,42622695-42622740,42624101-42624111,
42624141-42624392
Length = 770
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = -3
Query: 436 VSEL-IWNVSSTCNV*GLMILIEAWVAHQSFPPESNMLLTGVLPVPTLIVLRSVQDPSMS 260
VS+L W+++ G I+++ W A S ++L+T V T +++R S
Sbjct: 656 VSQLKAWSMTRAQKGDGNQIIVKKWFAIDSLSLLPDLLMTSTSLVATCVLVRVKTVLSPE 715
Query: 259 RHTPRDHHFLVPQTPSPP 206
PR P P PP
Sbjct: 716 SVLPRGGSGGDPAAPLPP 733
>01_01_0166 +
1412918-1413309,1413845-1414006,1414534-1414720,
1415221-1415646,1416028-1416036,1416361-1416768,
1417397-1417654
Length = 613
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +1
Query: 97 GTEDGCIHVYNCMDNIRIKKNKVKLQHNSGVHSIVFVEGKVFVALG 234
G+ D C VY +D + VK H GVH + FV+ V G
Sbjct: 556 GSLDTCAIVYE-IDKPASSRITVKGAHLGGVHGLTFVDNDSLVTAG 600
>07_03_0172 +
14697741-14697869,14697878-14697998,14698134-14698226,
14700888-14700946,14701003-14701599,14702813-14703020,
14703102-14703178,14703263-14703302,14703413-14703473,
14704120-14704189,14705014-14705235
Length = 558
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = -2
Query: 329 AAHRSAAGTNADSATFSPRSINVPTYTTRSPFPSATNTFPSTNTME*TPEL 177
A H+SAA + S + P ++ +P SP A+NT S M TPEL
Sbjct: 343 AVHQSAAQQSVSSQSGEPSAVAIP-----SP-SGASNTSNSKTRMRWTPEL 387
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 307 PAALR*AACCSREGSFGARPTPRS 378
PAA AACCSR AR PR+
Sbjct: 23 PAAAAAAACCSRRNISCARAAPRA 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,339,711
Number of Sequences: 37544
Number of extensions: 463231
Number of successful extensions: 1572
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1571
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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