Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1278
         (609 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           27   0.36 
U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette...    27   0.63 
U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette...    27   0.63 
U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette...    27   0.63 
AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled ...    26   0.83 
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          25   1.9  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    24   3.3  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    24   3.3  
AJ618920-1|CAF01999.1|  204|Anopheles gambiae putative odorant-b...    24   4.4  
AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T...    24   4.4  
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    23   7.7  
AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           23   7.7  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 27.5 bits (58), Expect = 0.36
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 317  SAAGTNADSATFSPRSINVPTYTTRSPFPSATNTFPSTNTME*TP 183
            S   T+A +AT  P  +        +P P+ T +  STN +E TP
Sbjct: 925  STPSTSAMAATIVPNPVQASPSPATAPAPAKTTSTDSTNGLE-TP 968


>U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 26.6 bits (56), Expect = 0.63
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = +3

Query: 336 LSGGKLWCATHASIKIINPHTLQVDE------TFQISSETKPISHMAVAGVNIWLSLH 491
           LSGG+      AS  + +PH L  DE      +F   S  + +  MA+ G  I L++H
Sbjct: 244 LSGGERKRLAFASETLTDPHLLLCDEPTSGLDSFMAHSVLQVLKGMAMKGKTIILTIH 301


>U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 26.6 bits (56), Expect = 0.63
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = +3

Query: 336 LSGGKLWCATHASIKIINPHTLQVDE------TFQISSETKPISHMAVAGVNIWLSLH 491
           LSGG+      AS  + +PH L  DE      +F   S  + +  MA+ G  I L++H
Sbjct: 244 LSGGERKRLAFASETLTDPHLLLCDEPTSGLDSFMAHSVLQVLKGMAMKGKTIILTIH 301


>U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 673

 Score = 26.6 bits (56), Expect = 0.63
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = +3

Query: 336 LSGGKLWCATHASIKIINPHTLQVDE------TFQISSETKPISHMAVAGVNIWLSLH 491
           LSGG+      AS  + +PH L  DE      +F   S  + +  MA+ G  I L++H
Sbjct: 222 LSGGERKRLAFASETLTDPHLLLCDEPTSGLDSFMAHSVLQVLKGMAMKGKTIILTIH 279


>AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled
           receptor protein.
          Length = 611

 Score = 26.2 bits (55), Expect = 0.83
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -3

Query: 334 NMLLTGVLPVPTLIVLRSVQDPSMSRHTPRDHHFLVPQTPSPP 206
           N   T  L +  +I L+  Q      H+P  +H  V   P PP
Sbjct: 49  NASFTLGLGLANVIQLQQQQQQQQLHHSPHQYHQQVQHQPQPP 91


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 337 SREGSFGARPTPRSRSSILTHYRWTKHSK*VQKRSQLATWRSRASTYGSRCTTR 498
           SR  S     + RSRS  L+       S+  + RS+ +  RSR+ T  SR  +R
Sbjct: 406 SRSRSKSLSKSSRSRSRSLSRSVSRSRSRGSRSRSRTSQSRSRSKTRTSRSRSR 459


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 456 AVAGVNIWLSLH--NAAQLRATIRTLASSSPRSTSLPQVQQDVAR 584
           AV+ VN+W+  H    A  +  + T++S    + ++P V   V R
Sbjct: 701 AVSAVNLWMENHCLELAPAKTELVTISSKRQGNINVPVVINGVER 745


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 26/97 (26%), Positives = 34/97 (35%), Gaps = 3/97 (3%)
 Frame = +3

Query: 267 DGSWTERSTISVGTGST--PVSSMLLSGGKLWCATHASIKIIN-PHTLQVDETFQISSET 437
           DG  T R +  V  GS   P    ++  G L         I+     L +     I    
Sbjct: 624 DGPVTRRVSAGVTQGSILGPTLWNIMYDGVLAVELPEGASIVGFADDLAILAAGTIPEHA 683

Query: 438 KPISHMAVAGVNIWLSLHNAAQLRATIRTLASSSPRS 548
             I+  AVA VN W+  H  +        L  SS RS
Sbjct: 684 AAIAEEAVAAVNNWMVQHKLSLAPEKTELLMISSKRS 720


>AJ618920-1|CAF01999.1|  204|Anopheles gambiae putative
           odorant-binding protein OBPjj4 protein.
          Length = 204

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 130 NCIRGCNHPQCPATLW 83
           NC+ G    QCP  +W
Sbjct: 156 NCVYGTLFEQCPTNVW 171


>AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1978

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +1

Query: 61   NATTANQPTMWLGTEDGCIHVYNCMDNIRIKKNKVKLQHNSGVHSIVFVEGKVFVALGNG 240
            ++    + T   GT DG     +  +  R K + +  Q   G H  V   G + +A+GN 
Sbjct: 1062 HSLAGGKATQGTGTADGGDAARDVRE--RRKSSLLSTQEREGSHCGVSGGGSISLAVGNS 1119

Query: 241  D 243
            D
Sbjct: 1120 D 1120


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 17/70 (24%), Positives = 25/70 (35%)
 Frame = -2

Query: 446 NWLRF*TYLECFVHL*CVRIDDLDRGVGRAPKLPSREQHAAHRSAAGTNADSATFSPRSI 267
           NWL F   +   +    +       G+G      SR+      S   T     T +P + 
Sbjct: 254 NWLSFKVRVPAILRDAALTPSTWPVGIGVREFFQSRQHDHQTSSPIATRNRFTTRTPATS 313

Query: 266 NVPTYTTRSP 237
               YTTR+P
Sbjct: 314 TEHRYTTRTP 323


>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 398 CVRIDDLDRGVGRAPKLPSREQHAAHRSAAGTNADSATFSPRSIN 264
           C+++ DL +   +   L +  Q AA   AA     SA  +PRS++
Sbjct: 637 CIKVFDLRQCHLQMQSLANCAQKAAQMQAAVVAGVSAVGAPRSMH 681


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 718,916
Number of Sequences: 2352
Number of extensions: 16573
Number of successful extensions: 68
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59291487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)