Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1278
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    27   0.11 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           27   0.11 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.4  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 101 LRMVASTYTIAWTISESKRIKSSCNTIQGF 190
           L +++S  T  WT+ ++ R+K+    I+G+
Sbjct: 6   LVLLSSLVTFGWTLEDAPRVKTPLGAIKGY 35


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 101 LRMVASTYTIAWTISESKRIKSSCNTIQGF 190
           L +++S  T  WT+ ++ R+K+    I+G+
Sbjct: 6   LVLLSSLVTFGWTLEDAPRVKTPLGAIKGY 35


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 329 AAHRSAAGTNADSATFSPRSINVPTYTTRSPFPSATNTFPST 204
           A   S AG+  D++T  P ++     TT  P  SAT T P+T
Sbjct: 202 ARDESKAGST-DAST--PATVTTTGATTTLPAASATGTGPAT 240



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +3

Query: 78  PAHNVAGH*GWLHPRIQLHGQYQNQKE*SQVATQ 179
           P H    H    HP+ Q   Q Q Q++  Q   Q
Sbjct: 809 PPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQ 842


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 379 LIEAWVAHQSFPPES-NMLLTGVLPVPT 299
           +++ W+AH  + P S  +LL   L + T
Sbjct: 799 IVKTWIAHDRYLPNSLRILLKRFLDITT 826


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 385 SILTHYRWTKHSK*VQKRSQLATWRSRASTYGSRCTTRRNCVLQYE 522
           SI  HY W  H K +   S+L    S A  + S     + C +  E
Sbjct: 106 SIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQICSMMIE 151


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 499 AALCSESHMLTPATAMWLIGFVSEL 425
           A L  E H  TP T  WL G   EL
Sbjct: 825 ATLHCEVHGDTPVTVTWLKGGKIEL 849


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 499 AALCSESHMLTPATAMWLIGFVSEL 425
           A L  E H  TP T  WL G   EL
Sbjct: 821 ATLHCEVHGDTPVTVTWLKGGKIEL 845


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 235 FLVPQTPSPPR 203
           F  P TPSPPR
Sbjct: 390 FATPCTPSPPR 400


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 73  QLLHCLLKTDDWLEMIE 23
           QLL  L++ DDW  ++E
Sbjct: 74  QLLPKLMEFDDWTSVME 90


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -2

Query: 236 FPSATNTFPSTNTME*TPELCCNLTLFF 153
           +PS        NT+E TP  C   ++ +
Sbjct: 345 YPSTETLNTKCNTLERTPSKCSQTSVHY 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,148
Number of Sequences: 438
Number of extensions: 4972
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)