Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1276X
         (503 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    28   0.055
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    28   0.055
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    26   0.22 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    26   0.22 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    26   0.22 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   0.51 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    24   0.67 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   1.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   2.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   2.7  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   3.6  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   3.6  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   4.7  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   8.3  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   8.3  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   8.3  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   8.3  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 27.9 bits (59), Expect = 0.055
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +1

Query: 46  IPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSP-----ASRFMGTPSEDPSSFTD 210
           +P+P  S  + SSP   +G  SP+ +  V+    + SP      + +   P+ +P+ F D
Sbjct: 86  MPSPTVSGSEMSSPGAGSGNLSPQIQTQVARPPPARSPYEWIKKTSYQSQPNPEPADFAD 145

Query: 211 PSPD 222
            +PD
Sbjct: 146 -APD 148


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 27.9 bits (59), Expect = 0.055
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +1

Query: 46  IPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSP-----ASRFMGTPSEDPSSFTD 210
           +P+P  S  + SSP   +G  SP+ +  V+    + SP      + +   P+ +P+ F D
Sbjct: 86  MPSPTVSGSEMSSPGAGSGNLSPQIQTQVARPPPARSPYEWIKKTSYQSQPNPEPADFAD 145

Query: 211 PSPD 222
            +PD
Sbjct: 146 -APD 148


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 25.8 bits (54), Expect = 0.22
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 241 PFLADHGRDWGP*RSLGPHSVCP*TLTPGTYYC 143
           P  A +G +WGP   LG  +VC     P + YC
Sbjct: 330 PAHAGNGWNWGPQEGLGELAVCV-NERPWSLYC 361


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 25.8 bits (54), Expect = 0.22
 Identities = 10/43 (23%), Positives = 18/43 (41%)
 Frame = +1

Query: 37  PTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPAS 165
           P  +PTP+P P +T+        + P          ++ +P S
Sbjct: 393 PEPVPTPEPQPTQTTESEPTQASEQPTESSTTQKPQTTKTPES 435



 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 25  LPSQPTRIPTPQPSPRKTSSP 87
           +P +P   P PQP+    S P
Sbjct: 391 IPPEPVPTPEPQPTQTTESEP 411


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.8 bits (54), Expect = 0.22
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +1

Query: 106 KSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTDPSPDHDRPGKDTVDTQQRCQSRD 279
           +S R      SG +  S  S  + + S  P  F   +P H  PG   +D  +R Q  D
Sbjct: 160 QSHRLMMTSPSGFNRAS-VSPLISSSSSPPGVFPVDAPMHSPPGDGILDFSKRGQKSD 216


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 0.51
 Identities = 14/57 (24%), Positives = 22/57 (38%)
 Frame = +1

Query: 55  PQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTDPSPDH 225
           P PS   +S P   T   +P Y         S+ P +   G+    P + + P  D+
Sbjct: 75  PSPSSTPSSLPTQRTSTSNPTYSSRSVMTSCSSVPTTASYGSDLYFPGATSQPPTDN 131


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 0.67
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 241 PFLADHGRDWGP*RSLGPHSVC 176
           P  A +G  WGP   LG  SVC
Sbjct: 307 PSHAGNGWQWGPDAGLGNLSVC 328


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 143 TVVRPRRQGSWAHRVRTQAPSR 208
           T +RP+RQ S  HR   + P R
Sbjct: 251 TKMRPKRQSSRRHRKNLKDPCR 272


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 37  PTRIPTPQPSPRKTSSP 87
           PT  PTP P P +  +P
Sbjct: 95  PTTPPTPSPPPEERLTP 111


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 209 TPVPTMIGQERIQLIPSSDARAATIPF 289
           TP  T + + R+   P +DAR A  PF
Sbjct: 506 TPNDTSLVRGRLVAKPVADARDAPAPF 532


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 55  PQPSPRKTSSPYYLTGGK 108
           P PSPR+ + P  +  GK
Sbjct: 112 PLPSPRRVAVPVLVRDGK 129


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 361 PVSMLRHSAPNDQQLTH 411
           P  +LRH   +D+Q TH
Sbjct: 361 PSQLLRHVEESDKQRTH 377


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 210 PQSRP*SARKGYS*YPAAMPEPRRSR 287
           PQ+ P + +  ++  P A+P P ++R
Sbjct: 227 PQNNPKNKQHNFNLPPGAIPVPDKNR 252


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 49  PTPQPSPRKTS 81
           PTP+P P K S
Sbjct: 251 PTPKPRPTKVS 261


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -1

Query: 395 SLGAECRSIETGATVXGCTMLSERFTLPTRVFAMSRTGSSRLWHRCWVSTVSFPGRS 225
           +L A  R+  +G     C +   RF+  + V    RT S    +RC +   +F   S
Sbjct: 36  NLTAHVRT-HSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSS 91


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -1

Query: 395 SLGAECRSIETGATVXGCTMLSERFTLPTRVFAMSRTGSSRLWHRCWVSTVSFPGRS 225
           +L A  R+  +G     C +   RF+  + V    RT S    +RC +   +F   S
Sbjct: 292 NLTAHVRT-HSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSS 347


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 155 PRRQGSWAHRVRTQAPSRTPVPTMI 229
           P+R  S A      +PS++P P  +
Sbjct: 203 PQRTASTASSASNYSPSQSPEPESV 227


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.310    0.126    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,620
Number of Sequences: 336
Number of extensions: 2855
Number of successful extensions: 21
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.9 bits)