SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1276X
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    29   0.30 
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    29   0.52 
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    28   0.69 
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    28   0.92 
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    28   0.92 
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    27   1.6  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   2.1  
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom...    26   3.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   3.7  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.7  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    25   4.9  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   4.9  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    25   6.5  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   6.5  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   8.5  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   8.5  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   8.5  
SPBC216.06c |swi1||replication fork protection complex subunit S...    25   8.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   8.5  

>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 1/116 (0%)
 Frame = +1

Query: 61  PSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTDPSPDHDRPGK 240
           P P K    +    GKS +  + V    S T+P+     TPS +    + PS + D    
Sbjct: 81  PPPEKPKKAH--GKGKSSKRPKAVDRRRSITAPSKTEPSTPSTEKPEPSTPSGESDHGSN 138

Query: 241 DTVDTQQRCQSRDDPVRLMANTRVGRVNLSLNIV-HPXTVAPVSMLRHSAPNDQQL 405
              ++    +    P  L     V R+  S ++V +P  +A +  +      D ++
Sbjct: 139 AGNESLPLLEEDHKPESLSKEQEVERLRFSGSMVQNPHEIARIRNINKICIGDHEI 194


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +1

Query: 55  PQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTDPSPDH--D 228
           P+ +PR  S P  + GGK+    +     H + SP S   GTPS DP+S +    +    
Sbjct: 437 PRFAPRG-SPP--VRGGKNVLSPEAKEHTHKNISPESSRFGTPS-DPNSSSQSLGNEVLS 492

Query: 229 RPGKDTVDTQQRCQSRDD 282
           RP  ++   + R    DD
Sbjct: 493 RPNSNSNSAESRNGETDD 510


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -1

Query: 260 CWVSTVSFPGRSWSGLGSVKELGSSLGVPMNLDAGDVLLCPLLTNCSYRGLLPPV 96
           CW S+++F G  +SG G   +  +    P +L + ++  CPLLT+     LL  +
Sbjct: 169 CWPSSLTFVG--FSG-GLTDDFLAESVFPPSLKSINITQCPLLTDAGIFSLLSKI 220


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 13  SLLGLPSQPTRIPTPQ-PSPRKTSSPYYLTGGKS 111
           S +GL S PT  P+P  P  + ++SP+Y +G K+
Sbjct: 159 SRIGLSSSPTNTPSPNLPVSQPSASPHY-SGDKN 191


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +1

Query: 40  TRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSF 204
           T +P   P    TSS  + T   +   E   S   SST  AS +  + +E  SS+
Sbjct: 129 TSVPVSTPETSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTEVTSSY 183


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
 Frame = +1

Query: 34  QPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQ------LVSSGHSSTSPASRFMGTPSEDP 195
           +P RI     SP  +SS  + T   SP Y +      L + G +  +P+    G P ED 
Sbjct: 56  EPVRIYGDSVSPAISSSKAHSTSSVSPYYSEKNESQALNADGTAFANPSFHSFGLPQEDS 115

Query: 196 SSFT 207
              T
Sbjct: 116 QDNT 119


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 25  LPSQPTRIPTPQPSP 69
           +P  PTR+P P PSP
Sbjct: 761 MPEMPTRMPPPGPSP 775


>SPBC16E9.17c |rem1||meiosis-specific cyclin
           Rem1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 272 LWHRCWVSTVSFPGRSWSGLGSVKE 198
           L + C  S   FP +SW G+ S++E
Sbjct: 36  LQNGCSPSDKHFPSQSWHGISSIEE 60


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
 Frame = +1

Query: 25  LPSQPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSF 204
           LPS    +P   P P  + +P   T  +   +        + TS + +F       PS+ 
Sbjct: 190 LPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGPSIPSAS 249

Query: 205 TDPSPD-----HDRPGKDTVDTQQRCQSRDD 282
             P P        RP +  VD   R   +DD
Sbjct: 250 VPPVPPSSYVLQQRPNR--VDDHGRFHFKDD 278


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 73  KTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTDPS 216
           +TSS Y++T   S       SS  SS+SP+S    + S   SS +  S
Sbjct: 140 RTSSSYFITSSSSTPSS---SSSSSSSSPSSSSSKSSSSSKSSSSSSS 184


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 474 DVGVVSAIFSLERS*GRLGIVMRKLLVIRGGVPQ-HRDWCDGLRMHYVERKVHSADASVR 298
           D G+     S E++ G  G+ +++L  I+ G+P  H  +       Y E  +H  D +V 
Sbjct: 37  DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSS--CSYSE-NLHDGDGNVN 93

Query: 297 HEP 289
             P
Sbjct: 94  SSP 96


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 61  PSPRKTSSPYYLTGGKSPRYEQLVSSG-HSSTSPASRFMGTPSEDPSS 201
           PSP K ++P YL    +P     VS+   S TS  S     PS  P++
Sbjct: 312 PSPPKPNNPVYLPPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPAT 359


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 13  SLLGLPSQPT-RIPTPQPSPRKTSSPY 90
           ++ G P++P   IP P+  PR+ +SPY
Sbjct: 132 TVYGDPTRPGGTIPIPESCPREGTSPY 158


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 25  LPSQPTRIPTPQPSPRKTS 81
           L  +PTRIPTP PS    S
Sbjct: 601 LSPKPTRIPTPIPSSLNVS 619


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 97   TGGKSPRYEQLVSSGHSSTSPASRFM 174
            +G     YEQLV + + S SPAS  +
Sbjct: 1549 SGETKQAYEQLVETMNKSVSPASEIL 1574


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 19/67 (28%), Positives = 24/67 (35%)
 Frame = +1

Query: 28  PSQPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFT 207
           P QP  + +  P P  TSS     G           SG    SP+   +  PS  P +  
Sbjct: 319 PFQPAGVGSV-PLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLPPADG 377

Query: 208 DPSPDHD 228
            P P  D
Sbjct: 378 VPKPTPD 384


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/50 (26%), Positives = 19/50 (38%)
 Frame = +1

Query: 43  RIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSED 192
           R   P P P   S P Y      P YE++   G  +     + + T + D
Sbjct: 252 RESVPAPLPSPPSGPIYTYTYPKPAYEKIDQIGEGTYGKVYKAINTVTGD 301


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 61  PSPRKTSSPYYLTGGKSPRY 120
           P P+ T + YYL  GKSP +
Sbjct: 664 PFPKLTDTFYYLEYGKSPLF 683


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 1/135 (0%)
 Frame = +1

Query: 28   PSQPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFT 207
            P  P     P P+P     P  +   K+P      S   S ++P S      S    S T
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPT 1268

Query: 208  DPSPDHDRPGKDTVD-TQQRCQSRDDPVRLMANTRVGRVNLSLNIVHPXTVAPVSMLRHS 384
              S     P + +V  ++ + +  +       +++ G  +   N  H  + +  + L H 
Sbjct: 1269 SSSMASAAPARTSVSRSKSKAERHETSTSSRKSSKSGEHHHHHNEGHADSSSTRTSLAHQ 1328

Query: 385  APNDQQLTHHDSKTS 429
              + + L  H S++S
Sbjct: 1329 -DSRKSLHRHLSRSS 1342


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 28  PSQPTRIPTPQPSPRKTSSPYYLTGGKSP 114
           P     +PTP P+P     P  + GG  P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.126    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,570
Number of Sequences: 5004
Number of extensions: 47729
Number of successful extensions: 140
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)

- SilkBase 1999-2023 -