BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1276X (503 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 29 0.30 SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 29 0.52 SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|... 28 0.69 SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 28 0.92 SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 28 0.92 SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 27 1.6 SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 27 2.1 SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 26 3.7 SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.7 SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 3.7 SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 25 4.9 SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 4.9 SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 25 6.5 SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 6.5 SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 8.5 SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 8.5 SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 25 8.5 SPBC216.06c |swi1||replication fork protection complex subunit S... 25 8.5 SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 8.5 SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 8.5 >SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharomyces pombe|chr 1|||Manual Length = 463 Score = 29.5 bits (63), Expect = 0.30 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 1/116 (0%) Frame = +1 Query: 61 PSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTDPSPDHDRPGK 240 P P K + GKS + + V S T+P+ TPS + + PS + D Sbjct: 81 PPPEKPKKAH--GKGKSSKRPKAVDRRRSITAPSKTEPSTPSTEKPEPSTPSGESDHGSN 138 Query: 241 DTVDTQQRCQSRDDPVRLMANTRVGRVNLSLNIV-HPXTVAPVSMLRHSAPNDQQL 405 ++ + P L V R+ S ++V +P +A + + D ++ Sbjct: 139 AGNESLPLLEEDHKPESLSKEQEVERLRFSGSMVQNPHEIARIRNINKICIGDHEI 194 >SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pombe|chr 1|||Manual Length = 561 Score = 28.7 bits (61), Expect = 0.52 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Frame = +1 Query: 55 PQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTDPSPDH--D 228 P+ +PR S P + GGK+ + H + SP S GTPS DP+S + + Sbjct: 437 PRFAPRG-SPP--VRGGKNVLSPEAKEHTHKNISPESSRFGTPS-DPNSSSQSLGNEVLS 492 Query: 229 RPGKDTVDTQQRCQSRDD 282 RP ++ + R DD Sbjct: 493 RPNSNSNSAESRNGETDD 510 >SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr 1|||Manual Length = 348 Score = 28.3 bits (60), Expect = 0.69 Identities = 17/55 (30%), Positives = 29/55 (52%) Frame = -1 Query: 260 CWVSTVSFPGRSWSGLGSVKELGSSLGVPMNLDAGDVLLCPLLTNCSYRGLLPPV 96 CW S+++F G +SG G + + P +L + ++ CPLLT+ LL + Sbjct: 169 CWPSSLTFVG--FSG-GLTDDFLAESVFPPSLKSINITQCPLLTDAGIFSLLSKI 220 >SPBP23A10.14c |ell1||RNA polymerase II transcription elongation factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual Length = 533 Score = 27.9 bits (59), Expect = 0.92 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +1 Query: 13 SLLGLPSQPTRIPTPQ-PSPRKTSSPYYLTGGKS 111 S +GL S PT P+P P + ++SP+Y +G K+ Sbjct: 159 SRIGLSSSPTNTPSPNLPVSQPSASPHY-SGDKN 191 >SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr 1|||Manual Length = 530 Score = 27.9 bits (59), Expect = 0.92 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = +1 Query: 40 TRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSF 204 T +P P TSS + T + E S SST AS + + +E SS+ Sbjct: 129 TSVPVSTPETSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTEVTSSY 183 >SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual Length = 963 Score = 27.1 bits (57), Expect = 1.6 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Frame = +1 Query: 34 QPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQ------LVSSGHSSTSPASRFMGTPSEDP 195 +P RI SP +SS + T SP Y + L + G + +P+ G P ED Sbjct: 56 EPVRIYGDSVSPAISSSKAHSTSSVSPYYSEKNESQALNADGTAFANPSFHSFGLPQEDS 115 Query: 196 SSFT 207 T Sbjct: 116 QDNT 119 >SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces pombe|chr 1|||Manual Length = 969 Score = 26.6 bits (56), Expect = 2.1 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +1 Query: 25 LPSQPTRIPTPQPSP 69 +P PTR+P P PSP Sbjct: 761 MPEMPTRMPPPGPSP 775 >SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharomyces pombe|chr 2|||Manual Length = 402 Score = 25.8 bits (54), Expect = 3.7 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = -1 Query: 272 LWHRCWVSTVSFPGRSWSGLGSVKE 198 L + C S FP +SW G+ S++E Sbjct: 36 LQNGCSPSDKHFPSQSWHGISSIEE 60 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 25.8 bits (54), Expect = 3.7 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Frame = +1 Query: 25 LPSQPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSF 204 LPS +P P P + +P T + + + TS + +F PS+ Sbjct: 190 LPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGPSIPSAS 249 Query: 205 TDPSPD-----HDRPGKDTVDTQQRCQSRDD 282 P P RP + VD R +DD Sbjct: 250 VPPVPPSSYVLQQRPNR--VDDHGRFHFKDD 278 >SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 317 Score = 25.8 bits (54), Expect = 3.7 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +1 Query: 73 KTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTDPS 216 +TSS Y++T S SS SS+SP+S + S SS + S Sbjct: 140 RTSSSYFITSSSSTPSS---SSSSSSSSPSSSSSKSSSSSKSSSSSSS 184 >SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 391 Score = 25.4 bits (53), Expect = 4.9 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Frame = -3 Query: 474 DVGVVSAIFSLERS*GRLGIVMRKLLVIRGGVPQ-HRDWCDGLRMHYVERKVHSADASVR 298 D G+ S E++ G G+ +++L I+ G+P H + Y E +H D +V Sbjct: 37 DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSS--CSYSE-NLHDGDGNVN 93 Query: 297 HEP 289 P Sbjct: 94 SSP 96 >SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr 3|||Manual Length = 867 Score = 25.4 bits (53), Expect = 4.9 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = +1 Query: 61 PSPRKTSSPYYLTGGKSPRYEQLVSSG-HSSTSPASRFMGTPSEDPSS 201 PSP K ++P YL +P VS+ S TS S PS P++ Sbjct: 312 PSPPKPNNPVYLPPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPAT 359 >SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pombe|chr 2|||Manual Length = 355 Score = 25.0 bits (52), Expect = 6.5 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = +1 Query: 13 SLLGLPSQPT-RIPTPQPSPRKTSSPY 90 ++ G P++P IP P+ PR+ +SPY Sbjct: 132 TVYGDPTRPGGTIPIPESCPREGTSPY 158 >SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Schizosaccharomyces pombe|chr 1|||Manual Length = 938 Score = 25.0 bits (52), Expect = 6.5 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = +1 Query: 25 LPSQPTRIPTPQPSPRKTS 81 L +PTRIPTP PS S Sbjct: 601 LSPKPTRIPTPIPSSLNVS 619 >SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 2100 Score = 24.6 bits (51), Expect = 8.5 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +1 Query: 97 TGGKSPRYEQLVSSGHSSTSPASRFM 174 +G YEQLV + + S SPAS + Sbjct: 1549 SGETKQAYEQLVETMNKSVSPASEIL 1574 >SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 620 Score = 24.6 bits (51), Expect = 8.5 Identities = 19/67 (28%), Positives = 24/67 (35%) Frame = +1 Query: 28 PSQPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFT 207 P QP + + P P TSS G SG SP+ + PS P + Sbjct: 319 PFQPAGVGSV-PLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLPPADG 377 Query: 208 DPSPDHD 228 P P D Sbjct: 378 VPKPTPD 384 >SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 593 Score = 24.6 bits (51), Expect = 8.5 Identities = 13/50 (26%), Positives = 19/50 (38%) Frame = +1 Query: 43 RIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSED 192 R P P P S P Y P YE++ G + + + T + D Sbjct: 252 RESVPAPLPSPPSGPIYTYTYPKPAYEKIDQIGEGTYGKVYKAINTVTGD 301 >SPBC216.06c |swi1||replication fork protection complex subunit Swi1|Schizosaccharomyces pombe|chr 2|||Manual Length = 971 Score = 24.6 bits (51), Expect = 8.5 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +1 Query: 61 PSPRKTSSPYYLTGGKSPRY 120 P P+ T + YYL GKSP + Sbjct: 664 PFPKLTDTFYYLEYGKSPLF 683 >SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1611 Score = 24.6 bits (51), Expect = 8.5 Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 1/135 (0%) Frame = +1 Query: 28 PSQPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFT 207 P P P P+P P + K+P S S ++P S S S T Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPT 1268 Query: 208 DPSPDHDRPGKDTVD-TQQRCQSRDDPVRLMANTRVGRVNLSLNIVHPXTVAPVSMLRHS 384 S P + +V ++ + + + +++ G + N H + + + L H Sbjct: 1269 SSSMASAAPARTSVSRSKSKAERHETSTSSRKSSKSGEHHHHHNEGHADSSSTRTSLAHQ 1328 Query: 385 APNDQQLTHHDSKTS 429 + + L H S++S Sbjct: 1329 -DSRKSLHRHLSRSS 1342 >SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1461 Score = 24.6 bits (51), Expect = 8.5 Identities = 10/29 (34%), Positives = 13/29 (44%) Frame = +1 Query: 28 PSQPTRIPTPQPSPRKTSSPYYLTGGKSP 114 P +PTP P+P P + GG P Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.310 0.126 0.371 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,212,570 Number of Sequences: 5004 Number of extensions: 47729 Number of successful extensions: 140 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 132 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 140 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 200198394 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (21.8 bits)
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