Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1276X
(503 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 29 0.30
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 29 0.52
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|... 28 0.69
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 28 0.92
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 28 0.92
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 27 1.6
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 27 2.1
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 26 3.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.7
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 3.7
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 25 4.9
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 4.9
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 25 6.5
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 6.5
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 8.5
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 8.5
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 25 8.5
SPBC216.06c |swi1||replication fork protection complex subunit S... 25 8.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 8.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 8.5
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 29.5 bits (63), Expect = 0.30
Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 1/116 (0%)
Frame = +1
Query: 61 PSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTDPSPDHDRPGK 240
P P K + GKS + + V S T+P+ TPS + + PS + D
Sbjct: 81 PPPEKPKKAH--GKGKSSKRPKAVDRRRSITAPSKTEPSTPSTEKPEPSTPSGESDHGSN 138
Query: 241 DTVDTQQRCQSRDDPVRLMANTRVGRVNLSLNIV-HPXTVAPVSMLRHSAPNDQQL 405
++ + P L V R+ S ++V +P +A + + D ++
Sbjct: 139 AGNESLPLLEEDHKPESLSKEQEVERLRFSGSMVQNPHEIARIRNINKICIGDHEI 194
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 28.7 bits (61), Expect = 0.52
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +1
Query: 55 PQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTDPSPDH--D 228
P+ +PR S P + GGK+ + H + SP S GTPS DP+S + +
Sbjct: 437 PRFAPRG-SPP--VRGGKNVLSPEAKEHTHKNISPESSRFGTPS-DPNSSSQSLGNEVLS 492
Query: 229 RPGKDTVDTQQRCQSRDD 282
RP ++ + R DD
Sbjct: 493 RPNSNSNSAESRNGETDD 510
>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 348
Score = 28.3 bits (60), Expect = 0.69
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -1
Query: 260 CWVSTVSFPGRSWSGLGSVKELGSSLGVPMNLDAGDVLLCPLLTNCSYRGLLPPV 96
CW S+++F G +SG G + + P +L + ++ CPLLT+ LL +
Sbjct: 169 CWPSSLTFVG--FSG-GLTDDFLAESVFPPSLKSINITQCPLLTDAGIFSLLSKI 220
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 0.92
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 13 SLLGLPSQPTRIPTPQ-PSPRKTSSPYYLTGGKS 111
S +GL S PT P+P P + ++SP+Y +G K+
Sbjct: 159 SRIGLSSSPTNTPSPNLPVSQPSASPHY-SGDKN 191
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 27.9 bits (59), Expect = 0.92
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 40 TRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSF 204
T +P P TSS + T + E S SST AS + + +E SS+
Sbjct: 129 TSVPVSTPETSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTEVTSSY 183
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 1.6
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Frame = +1
Query: 34 QPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQ------LVSSGHSSTSPASRFMGTPSEDP 195
+P RI SP +SS + T SP Y + L + G + +P+ G P ED
Sbjct: 56 EPVRIYGDSVSPAISSSKAHSTSSVSPYYSEKNESQALNADGTAFANPSFHSFGLPQEDS 115
Query: 196 SSFT 207
T
Sbjct: 116 QDNT 119
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 26.6 bits (56), Expect = 2.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 25 LPSQPTRIPTPQPSP 69
+P PTR+P P PSP
Sbjct: 761 MPEMPTRMPPPGPSP 775
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 272 LWHRCWVSTVSFPGRSWSGLGSVKE 198
L + C S FP +SW G+ S++E
Sbjct: 36 LQNGCSPSDKHFPSQSWHGISSIEE 60
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 3.7
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Frame = +1
Query: 25 LPSQPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSF 204
LPS +P P P + +P T + + + TS + +F PS+
Sbjct: 190 LPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGPSIPSAS 249
Query: 205 TDPSPD-----HDRPGKDTVDTQQRCQSRDD 282
P P RP + VD R +DD
Sbjct: 250 VPPVPPSSYVLQQRPNR--VDDHGRFHFKDD 278
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 3.7
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 73 KTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTDPS 216
+TSS Y++T S SS SS+SP+S + S SS + S
Sbjct: 140 RTSSSYFITSSSSTPSS---SSSSSSSSPSSSSSKSSSSSKSSSSSSS 184
>SPAC4F10.18 |||WD repeat protein, human NUP37
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 25.4 bits (53), Expect = 4.9
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -3
Query: 474 DVGVVSAIFSLERS*GRLGIVMRKLLVIRGGVPQ-HRDWCDGLRMHYVERKVHSADASVR 298
D G+ S E++ G G+ +++L I+ G+P H + Y E +H D +V
Sbjct: 37 DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSS--CSYSE-NLHDGDGNVN 93
Query: 297 HEP 289
P
Sbjct: 94 SSP 96
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 4.9
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 61 PSPRKTSSPYYLTGGKSPRYEQLVSSG-HSSTSPASRFMGTPSEDPSS 201
PSP K ++P YL +P VS+ S TS S PS P++
Sbjct: 312 PSPPKPNNPVYLPPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPAT 359
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 13 SLLGLPSQPT-RIPTPQPSPRKTSSPY 90
++ G P++P IP P+ PR+ +SPY
Sbjct: 132 TVYGDPTRPGGTIPIPESCPREGTSPY 158
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 25 LPSQPTRIPTPQPSPRKTS 81
L +PTRIPTP PS S
Sbjct: 601 LSPKPTRIPTPIPSSLNVS 619
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 97 TGGKSPRYEQLVSSGHSSTSPASRFM 174
+G YEQLV + + S SPAS +
Sbjct: 1549 SGETKQAYEQLVETMNKSVSPASEIL 1574
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 24.6 bits (51), Expect = 8.5
Identities = 19/67 (28%), Positives = 24/67 (35%)
Frame = +1
Query: 28 PSQPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFT 207
P QP + + P P TSS G SG SP+ + PS P +
Sbjct: 319 PFQPAGVGSV-PLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLPPADG 377
Query: 208 DPSPDHD 228
P P D
Sbjct: 378 VPKPTPD 384
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/50 (26%), Positives = 19/50 (38%)
Frame = +1
Query: 43 RIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSED 192
R P P P S P Y P YE++ G + + + T + D
Sbjct: 252 RESVPAPLPSPPSGPIYTYTYPKPAYEKIDQIGEGTYGKVYKAINTVTGD 301
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 24.6 bits (51), Expect = 8.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 61 PSPRKTSSPYYLTGGKSPRY 120
P P+ T + YYL GKSP +
Sbjct: 664 PFPKLTDTFYYLEYGKSPLF 683
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.6 bits (51), Expect = 8.5
Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 1/135 (0%)
Frame = +1
Query: 28 PSQPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFT 207
P P P P+P P + K+P S S ++P S S S T
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPT 1268
Query: 208 DPSPDHDRPGKDTVD-TQQRCQSRDDPVRLMANTRVGRVNLSLNIVHPXTVAPVSMLRHS 384
S P + +V ++ + + + +++ G + N H + + + L H
Sbjct: 1269 SSSMASAAPARTSVSRSKSKAERHETSTSSRKSSKSGEHHHHHNEGHADSSSTRTSLAHQ 1328
Query: 385 APNDQQLTHHDSKTS 429
+ + L H S++S
Sbjct: 1329 -DSRKSLHRHLSRSS 1342
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 24.6 bits (51), Expect = 8.5
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +1
Query: 28 PSQPTRIPTPQPSPRKTSSPYYLTGGKSP 114
P +PTP P+P P + GG P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.126 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,570
Number of Sequences: 5004
Number of extensions: 47729
Number of successful extensions: 140
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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