Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1276X
(503 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 36 0.022
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 36 0.022
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 36 0.022
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 36 0.022
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 35 0.029
Z81539-6|CAB63201.2| 236|Caenorhabditis elegans Hypothetical pr... 35 0.039
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 32 0.21
U41624-7|AAF99946.3| 302|Caenorhabditis elegans Hypothetical pr... 32 0.21
AF016448-10|ABR92607.1| 849|Caenorhabditis elegans Smek (dictyo... 32 0.21
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos... 32 0.21
Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical pr... 30 0.83
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 30 1.1
AF100656-8|AAF99965.1| 210|Caenorhabditis elegans Hypothetical ... 30 1.1
U58762-3|AAM15611.1| 331|Caenorhabditis elegans Hypothetical pr... 29 1.4
U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical pr... 29 1.4
U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z29443-10|CAA82578.2| 315|Caenorhabditis elegans Hypothetical p... 29 1.9
AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical ... 29 1.9
AB121091-1|BAD14918.1| 315|Caenorhabditis elegans T-box transcr... 29 1.9
Z81547-4|CAB04458.1| 368|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z82078-6|CAB04946.1| 257|Caenorhabditis elegans Hypothetical pr... 28 3.3
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 28 3.3
Z68227-18|CAA92521.1| 869|Caenorhabditis elegans Hypothetical p... 28 4.4
Z68220-11|CAA92493.1| 869|Caenorhabditis elegans Hypothetical p... 28 4.4
U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical pr... 27 5.8
U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical pr... 27 5.8
U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical pr... 27 5.8
U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z66497-4|CAA91284.1| 401|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 27 7.7
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 7.7
U61945-5|AAB03128.1| 517|Caenorhabditis elegans Hypothetical pr... 27 7.7
U53343-5|AAA96222.1| 556|Caenorhabditis elegans Hypothetical pr... 27 7.7
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 27 7.7
AF098992-6|AAC67456.2| 182|Caenorhabditis elegans Hypothetical ... 27 7.7
AC006790-5|AAF60733.1| 330|Caenorhabditis elegans Hypothetical ... 27 7.7
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 35.5 bits (78), Expect = 0.022
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +1
Query: 28 PSQPTRIPTPQPSPRKTSSPYYLTGG--KSPRYEQLVSSGHSSTSPASRFMGTPSEDPSS 201
PS + +P+ + K +SP TG KSP+ + S SPA+ + +P++ S
Sbjct: 1377 PSPDKKEKSPEKTEEKPASPTKKTGEEVKSPKEKSPASPTKKEKSPAAEEVKSPTKKEKS 1436
Query: 202 FTDPSPDHDRPGKDTVDTQQRCQSRDDP 285
+ P+ P T T + + P
Sbjct: 1437 PSSPTKKEKSPSSPTKKTGDEVKEKSPP 1464
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 35.5 bits (78), Expect = 0.022
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +1
Query: 28 PSQPTRIPTPQPSPRKTSSPYYLTGG--KSPRYEQLVSSGHSSTSPASRFMGTPSEDPSS 201
PS + +P+ + K +SP TG KSP+ + S SPA+ + +P++ S
Sbjct: 1377 PSPDKKEKSPEKTEEKPASPTKKTGEEVKSPKEKSPASPTKKEKSPAAEEVKSPTKKEKS 1436
Query: 202 FTDPSPDHDRPGKDTVDTQQRCQSRDDP 285
+ P+ P T T + + P
Sbjct: 1437 PSSPTKKEKSPSSPTKKTGDEVKEKSPP 1464
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 35.5 bits (78), Expect = 0.022
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +1
Query: 28 PSQPTRIPTPQPSPRKTSSPYYLTGG--KSPRYEQLVSSGHSSTSPASRFMGTPSEDPSS 201
PS + +P+ + K +SP TG KSP+ + S SPA+ + +P++ S
Sbjct: 1377 PSPDKKEKSPEKTEEKPASPTKKTGEEVKSPKEKSPASPTKKEKSPAAEEVKSPTKKEKS 1436
Query: 202 FTDPSPDHDRPGKDTVDTQQRCQSRDDP 285
+ P+ P T T + + P
Sbjct: 1437 PSSPTKKEKSPSSPTKKTGDEVKEKSPP 1464
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 35.5 bits (78), Expect = 0.022
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +1
Query: 28 PSQPTRIPTPQPSPRKTSSPYYLTGG--KSPRYEQLVSSGHSSTSPASRFMGTPSEDPSS 201
PS + +P+ + K +SP TG KSP+ + S SPA+ + +P++ S
Sbjct: 1377 PSPDKKEKSPEKTEEKPASPTKKTGEEVKSPKEKSPASPTKKEKSPAAEEVKSPTKKEKS 1436
Query: 202 FTDPSPDHDRPGKDTVDTQQRCQSRDDP 285
+ P+ P T T + + P
Sbjct: 1437 PSSPTKKEKSPSSPTKKTGDEVKEKSPP 1464
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 35.1 bits (77), Expect = 0.029
Identities = 24/70 (34%), Positives = 30/70 (42%)
Frame = +1
Query: 28 PSQPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFT 207
PS T P+ +PSP SP + + P+ SG S P PSEDP
Sbjct: 88 PSPGTVAPSDEPSPSGPPSPGPVNPSEDPQ-----PSGPPSPGPVD-----PSEDPQPSV 137
Query: 208 DPSPDHDRPG 237
+PS DH G
Sbjct: 138 EPSEDHQPSG 147
Score = 35.1 bits (77), Expect = 0.029
Identities = 22/72 (30%), Positives = 28/72 (38%)
Frame = +1
Query: 22 GLPSQPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSS 201
G PS P+ P P SP + + P+ S H + P S PSEDP
Sbjct: 103 GPPSPGPVNPSEDPQPSGPPSPGPVDPSEDPQPSVEPSEDHQPSGPPSPGPVDPSEDPQP 162
Query: 202 FTDPSPDHDRPG 237
+PS D G
Sbjct: 163 SVEPSEDPQPSG 174
Score = 30.3 bits (65), Expect = 0.83
Identities = 24/84 (28%), Positives = 34/84 (40%)
Frame = +1
Query: 34 QPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTDP 213
QP+ P+ P P SP + + P+ SG SS P PS++PS P
Sbjct: 161 QPSVEPSEDPQPSGPPSPGPVDPSEDPQ-----PSGSSSPGPVD-----PSDEPSPSGPP 210
Query: 214 SPDHDRPGKDTVDTQQRCQSRDDP 285
SP P +D ++ DP
Sbjct: 211 SPGPVDPSEDPKPSEPPSPGPVDP 234
>Z81539-6|CAB63201.2| 236|Caenorhabditis elegans Hypothetical
protein F46A8.8 protein.
Length = 236
Score = 34.7 bits (76), Expect = 0.039
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +1
Query: 28 PSQPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSE 189
P +P R P P P+P+ + L G P + G+ T RF G P +
Sbjct: 78 PPRPPRPPRPVPTPKPVENMETLNGPFGPDVRYPIPGGYWDTGKVLRFYGVPGQ 131
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 32.3 bits (70), Expect = 0.21
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Frame = +1
Query: 31 SQPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPAS--RFMGTPS--EDPS 198
+QP P+ P PR P G PR + ++ G+S P+S +G P
Sbjct: 369 AQPNHCPSGPPGPRGRPGPPGFPGQDGPRGLRGLNGGYSGVQPSSYDPVIGCVQCPIGPP 428
Query: 199 SFTDPSPDHDRPGKDTVDTQQRCQSRD 279
P PG+D +D +Q +D
Sbjct: 429 GERGPDGTPGVPGEDGIDGEQGVNGQD 455
Score = 28.3 bits (60), Expect = 3.3
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Frame = +1
Query: 22 GLPSQPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMG---TPSED 192
G P+ P R+P P P T P Y ++P + P+ + TP
Sbjct: 205 GYPTNP-RVPYNPPQPNYTRQPTYPEDNRAPYKPTRSPNTPPPRQPSGGYDSDGQTPPSS 263
Query: 193 PSSFTDPSPDHDRPG--KDTVDT 255
P + P++ PG +D V T
Sbjct: 264 PRIYNTRRPNNHGPGYPEDQVPT 286
>U41624-7|AAF99946.3| 302|Caenorhabditis elegans Hypothetical
protein F46C8.8 protein.
Length = 302
Score = 32.3 bits (70), Expect = 0.21
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Frame = +1
Query: 49 PTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPA-----SRF--MGTPSEDPSSFT 207
PTP+P PR+ +L GG++ L S SS S A S F M TP+ ++ T
Sbjct: 145 PTPRPRPRQNLFGQFLGGGQAANSNALPSQQSSSQSAAGGNLLSLFGLMPTPAPTTTTTT 204
Query: 208 DPSP 219
+ SP
Sbjct: 205 EASP 208
>AF016448-10|ABR92607.1| 849|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform b protein.
Length = 849
Score = 32.3 bits (70), Expect = 0.21
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = +1
Query: 37 PTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTD-- 210
P+R P+P SPR +SSP G S E S + +SP D S +D
Sbjct: 695 PSRTPSPASSPRASSSP-----GPSRDDEVTSSQNNKESSPTPTVKSLVDYDESDDSDDD 749
Query: 211 -PSPDHDRPGKDTVDTQQRCQSRD 279
PSPD P T ++ S D
Sbjct: 750 PPSPD-AVPSSSTGSPEKEGDSAD 772
>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform a protein.
Length = 1085
Score = 32.3 bits (70), Expect = 0.21
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = +1
Query: 37 PTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTD-- 210
P+R P+P SPR +SSP G S E S + +SP D S +D
Sbjct: 931 PSRTPSPASSPRASSSP-----GPSRDDEVTSSQNNKESSPTPTVKSLVDYDESDDSDDD 985
Query: 211 -PSPDHDRPGKDTVDTQQRCQSRD 279
PSPD P T ++ S D
Sbjct: 986 PPSPD-AVPSSSTGSPEKEGDSAD 1008
>Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical
protein ZK1010.5 protein.
Length = 756
Score = 30.3 bits (65), Expect = 0.83
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Frame = +1
Query: 34 QPTRIPTPQPSPRKTSSPYYLTGGKSPRY-----EQLVSSGHSSTSPASRFMGTPSEDPS 198
QP P+P+P P S+P +T G + +Q + + AS P PS
Sbjct: 585 QPPSPPSPEPEPEPKSTPEPVTDGPNESQSTALPQQTTDAPVDPVTEASPLNPQPPPPPS 644
Query: 199 SFTDPSPDHDRP 234
+P P+ P
Sbjct: 645 PSPEPEPEPKPP 656
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 29.9 bits (64), Expect = 1.1
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +1
Query: 37 PTRIPTPQPSP-RKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSE-DPSSFTD 210
P R +P+ +P R+ +SP GG SP + S+G+ SP R G+P P T
Sbjct: 175 PARALSPRKTPPRRNASPGGDGGGGSPAARRGGSAGNRRRSPPRR--GSPRRGSPRRDTR 232
Query: 211 PSPDHDRPGKDTVDTQQRCQSRDD--PVR 291
SP R G R R+D PVR
Sbjct: 233 RSPPR-RRGSPPARGGDRRDRREDRRPVR 260
>AF100656-8|AAF99965.1| 210|Caenorhabditis elegans Hypothetical
protein F49F1.9 protein.
Length = 210
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 28 PSQPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTP 183
P +P R P P P P + + G RY + G+ +T RF G P
Sbjct: 54 PPRPPRPPRPTPKPVENMETLHGPFGPGVRYP--IPGGYWATGKVLRFYGVP 103
>U58762-3|AAM15611.1| 331|Caenorhabditis elegans Hypothetical
protein T27F7.2c protein.
Length = 331
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +1
Query: 229 RPGKDTVDTQQRCQSRDDPVRLMANTRVGRVNLSLNIVHPXTVAPVSMLRHSAPNDQQL 405
+ G TVD +C+ + PV + ++ + R++ S + V+P +S + AP +QL
Sbjct: 27 KKGSQTVDESGQCKRKRRPVSAVFSSAIHRLSSSTSSVNPKR---MSTIEPQAPTREQL 82
>U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical
protein T27F7.2b protein.
Length = 722
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +1
Query: 229 RPGKDTVDTQQRCQSRDDPVRLMANTRVGRVNLSLNIVHPXTVAPVSMLRHSAPNDQQL 405
+ G TVD +C+ + PV + ++ + R++ S + V+P +S + AP +QL
Sbjct: 396 KKGSQTVDESGQCKRKRRPVSAVFSSAIHRLSSSTSSVNPKR---MSTIEPQAPTREQL 451
>U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical
protein T27F7.2a protein.
Length = 732
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +1
Query: 229 RPGKDTVDTQQRCQSRDDPVRLMANTRVGRVNLSLNIVHPXTVAPVSMLRHSAPNDQQL 405
+ G TVD +C+ + PV + ++ + R++ S + V+P +S + AP +QL
Sbjct: 406 KKGSQTVDESGQCKRKRRPVSAVFSSAIHRLSSSTSSVNPKR---MSTIEPQAPTREQL 461
>Z29443-10|CAA82578.2| 315|Caenorhabditis elegans Hypothetical
protein T07C4.2 protein.
Length = 315
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +1
Query: 28 PSQPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFT 207
P P +PT P P + +Y P + L ++G+ P G P P SF
Sbjct: 236 PLMPRILPTMIPPPPAINPLFY----SLPYFSHLAATGNFPPVPFQFPFGLPCFSPMSFP 291
Query: 208 DPSP 219
P P
Sbjct: 292 TPPP 295
>AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical
protein T07A9.14 protein.
Length = 204
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 37 PTRIPTPQPSPRKTSSPYYLTGGKSPRYE 123
P+ PTP P P +SSP +SPR++
Sbjct: 172 PSSTPTPTPPPSSSSSPTPTPLRRSPRFQ 200
>AB121091-1|BAD14918.1| 315|Caenorhabditis elegans T-box
transcription factor TBX-8 protein.
Length = 315
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +1
Query: 28 PSQPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFT 207
P P +PT P P + +Y P + L ++G+ P G P P SF
Sbjct: 236 PLMPRILPTMIPPPPAINPLFY----SLPYFSHLAATGNFPPVPFQFPFGLPCFSPMSFP 291
Query: 208 DPSP 219
P P
Sbjct: 292 TPPP 295
>Z81547-4|CAB04458.1| 368|Caenorhabditis elegans Hypothetical
protein F53F8.5 protein.
Length = 368
Score = 28.7 bits (61), Expect = 2.5
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +1
Query: 277 DDPVRLMANTRVGRVNLSLNIVHPXTVAPVSMLRHSAPNDQQLTHHDSKTSLASLQTENS 456
D PVR + GR++ ++ P AP S R SA + Q HH TS +S
Sbjct: 297 DAPVRQRISYSSGRLSSTVQRAPPRASAPSSSSR-SAHHHHQPRHHRHDTSSRGGAPSSS 355
Query: 457 TDDAYVRCKY 486
+ + + R +
Sbjct: 356 SSNVFNRLSF 365
>Z82078-6|CAB04946.1| 257|Caenorhabditis elegans Hypothetical
protein W09D6.5 protein.
Length = 257
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/39 (48%), Positives = 22/39 (56%)
Frame = +1
Query: 49 PTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPAS 165
P P+ SP TSS Y + SPR LVSS SS S +S
Sbjct: 91 PPPRKSPVMTSS-YQVQYPNSPRDLHLVSSTPSSRSSSS 128
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 28.3 bits (60), Expect = 3.3
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +1
Query: 49 PTPQPSPRKTSSPYYL---TGG-KSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTDPS 216
P+P PSP + S+P L TGG SP S S P++ +P P+ ++PS
Sbjct: 1397 PSPGPSPNEPSNPSILGPSTGGDPSPGPSPNEPSNPSILGPSTGGDPSPGPSPNGPSNPS 1456
Query: 217 PDHDRPG 237
G
Sbjct: 1457 VPESSTG 1463
>Z68227-18|CAA92521.1| 869|Caenorhabditis elegans Hypothetical
protein F49C12.15 protein.
Length = 869
Score = 27.9 bits (59), Expect = 4.4
Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Frame = +1
Query: 55 PQPSPRKTSSPYYLTGG-KSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTDPSPDHDR 231
P P TSS + SP+ + S S S A R D + PSPD
Sbjct: 446 PSAPPASTSSSSKNSSSINSPKTPNISGSSRRSRSRAKRHKALQKRDSKTNRTPSPDRQS 505
Query: 232 PGKD 243
KD
Sbjct: 506 CKKD 509
>Z68220-11|CAA92493.1| 869|Caenorhabditis elegans Hypothetical
protein F49C12.15 protein.
Length = 869
Score = 27.9 bits (59), Expect = 4.4
Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Frame = +1
Query: 55 PQPSPRKTSSPYYLTGG-KSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTDPSPDHDR 231
P P TSS + SP+ + S S S A R D + PSPD
Sbjct: 446 PSAPPASTSSSSKNSSSINSPKTPNISGSSRRSRSRAKRHKALQKRDSKTNRTPSPDRQS 505
Query: 232 PGKD 243
KD
Sbjct: 506 CKKD 509
>U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical
protein K03C7.1 protein.
Length = 867
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Frame = +1
Query: 28 PSQPTRIPTP--QPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTP-SEDPS 198
P +P + P + P + + + + K P E L A + P EDP
Sbjct: 136 PPKPAALKKPPWEDDPDEPEADFTMPAPKKPDTEDLADPPEPPKPAAPKKWKPPWEEDPD 195
Query: 199 SFTDPSPDHDRPGKDTVDTQ 258
+P D+ P DT+
Sbjct: 196 EPEEPEADYTMPAPKKPDTE 215
>U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical
protein T13C2.6a protein.
Length = 909
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -3
Query: 363 WCDGLRMHYVERKVHSADASVR 298
W +GL + YV+++V+ ADA ++
Sbjct: 658 WPNGLALDYVDKRVYWADAKIK 679
>U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical
protein T13C2.6b protein.
Length = 911
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -3
Query: 363 WCDGLRMHYVERKVHSADASVR 298
W +GL + YV+++V+ ADA ++
Sbjct: 660 WPNGLALDYVDKRVYWADAKIK 681
>U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical
protein C34E10.8 protein.
Length = 1024
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +1
Query: 13 SLLGLPSQPTRIPTPQPSPRKTSSP--YYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPS 186
S G + R+P P+ SP +SP Y + ++S+ ++S+ F G +
Sbjct: 449 SQFGGGKKKQRLP-PRRSPSFGTSPNSYQFHQQSQKKMPSIISTAYNSSPGKMNFQGWKN 507
Query: 187 EDPSSFTDPSP 219
+ SS T P P
Sbjct: 508 QSTSSATRPLP 518
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/79 (22%), Positives = 32/79 (40%)
Frame = +1
Query: 28 PSQPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFT 207
P +P ++P P P + + Y GG + L S ++ + A TPS P +
Sbjct: 36 PQKPAQVPGGFPPPHQQPNGQYQNGGLNGNSSHLAQSVNNMSIGA---RSTPSAQPPNPY 92
Query: 208 DPSPDHDRPGKDTVDTQQR 264
P+ P + Q++
Sbjct: 93 QPAGYPGAPPQQLQQVQRQ 111
>Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical
protein B0001.8 protein.
Length = 490
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = +1
Query: 64 SPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSED 192
S + SP G SPR +SG S+TS SR T SED
Sbjct: 278 SAERRRSPTRSYRGASPRNLARSNSGLSTTSKISRAPTTDSED 320
>Z66497-4|CAA91284.1| 401|Caenorhabditis elegans Hypothetical
protein K08F8.2 protein.
Length = 401
Score = 27.1 bits (57), Expect = 7.7
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +1
Query: 58 QPSPRKTSS-PYYLTGGKSP-RYEQLVSSGHSSTSPASRFMGTPSEDPSSFTDPSPDHDR 231
+PSP S +++G SP R+ S S +S AS SED S++++ SP +
Sbjct: 275 RPSPTVPQSRTEHISGLNSPPRHTGNKSDCESVSSSASFSPSHSSEDHSNYSNKSPQYVD 334
Query: 232 PGKDTVDTQQRCQS 273
+ + +RC++
Sbjct: 335 RRRRNNEAAKRCRA 348
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical protein
R107.8 protein.
Length = 1429
Score = 27.1 bits (57), Expect = 7.7
Identities = 21/76 (27%), Positives = 27/76 (35%)
Frame = +1
Query: 40 TRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTDPSP 219
TR P Q S K S S S G +ST FM T P+S SP
Sbjct: 1321 TRAPKKQTSRSKKESAS--NSRDSTHLTPPPSDGSTSTPSPQHFMNTTHTTPTSLNYLSP 1378
Query: 220 DHDRPGKDTVDTQQRC 267
++ + Q +C
Sbjct: 1379 EYQTEAGSSEAFQPQC 1394
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +1
Query: 52 TPQPSPRKTSSPYYLTGG----KSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTDPSP 219
+P PS + ++P +G ++P+ Q S SSTS A+ G+P +S + PSP
Sbjct: 967 SPIPSTSQNTNPSTSSGSSMSTQTPQSSQSTSPVESSTSGATSSSGSPGTTLTSIS-PSP 1025
>U61945-5|AAB03128.1| 517|Caenorhabditis elegans Hypothetical
protein C49C8.1 protein.
Length = 517
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +1
Query: 67 PRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTD 210
P+ T P + GGK PRY LV A + S +PS F+D
Sbjct: 78 PKNTVFPELICGGKRPRYHFLVLELLGDNLKA---LKAQSPNPSVFSD 122
>U53343-5|AAA96222.1| 556|Caenorhabditis elegans Hypothetical
protein F22F4.1 protein.
Length = 556
Score = 27.1 bits (57), Expect = 7.7
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 34 QPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSS--GHSSTSPASRFMGTPSEDPSSFT 207
+PT PTP P+P SS ++P L+SS G+S AS + P +S T
Sbjct: 54 KPTEAPTPAPTPPPQSSEI----RRAP-INPLISSMDGYSPQFAASEYNAMPQLSQASDT 108
Query: 208 DPSP 219
+P
Sbjct: 109 PRNP 112
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.elegans
homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 27.1 bits (57), Expect = 7.7
Identities = 21/76 (27%), Positives = 27/76 (35%)
Frame = +1
Query: 40 TRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPASRFMGTPSEDPSSFTDPSP 219
TR P Q S K S S S G +ST FM T P+S SP
Sbjct: 1321 TRAPKKQTSRSKKESAS--NSRDSTHLTPPPSDGSTSTPSPQHFMNTTHTTPTSLNYLSP 1378
Query: 220 DHDRPGKDTVDTQQRC 267
++ + Q +C
Sbjct: 1379 EYQTEAGSSEAFQPQC 1394
>AF098992-6|AAC67456.2| 182|Caenorhabditis elegans Hypothetical
protein F53C3.5 protein.
Length = 182
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 298 ANTRVGRVNLSLNIVHPXTVAPVSMLRHSAPND 396
AN R G+ + + + HP +V V L SAPND
Sbjct: 132 ANERRGQGSPTTSYNHPRSVPEVQELTPSAPND 164
>AC006790-5|AAF60733.1| 330|Caenorhabditis elegans Hypothetical
protein Y49F6B.7 protein.
Length = 330
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +2
Query: 407 RITIPRRP*LLSKLKIALTTPTSDVNTQSAL 499
RI + RP L LK ALT T D NT+S L
Sbjct: 78 RIALQSRPVNLHDLKDALTYQTIDGNTKSEL 108
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.310 0.126 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,472,207
Number of Sequences: 27780
Number of extensions: 281692
Number of successful extensions: 1026
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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