Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1276X
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.34 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.4  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   7.3  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   9.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +1

Query: 58  QPSPRKTSSPYYLTGGK---SPRYEQLVSSGHSSTSP 159
           Q   +++SS Y + G     SPRY    ++  +STSP
Sbjct: 806 QQQQQQSSSDYLMVGNSPASSPRYLSAAATSSTSTSP 842


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 220 DHDRPGKDTVDTQQRCQSRDDPVRL 294
           DH RP +     QQR Q R +  RL
Sbjct: 158 DHHRPYQQQQQQQQRQQQRQEERRL 182



 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 382 SAPNDQQLTHHDSKTSLASLQTE 450
           S P  QQL HH S    A  Q +
Sbjct: 807 SQPPHQQLHHHQSTHPQAQAQAQ 829


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 330 RKVHSADASVRHEPNGIVAALASLLGIN 247
           R++H A   +R  P GI   L  LL +N
Sbjct: 288 REIHLAYNGLRDLPKGIFTRLEQLLVLN 315


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 76  TSSPYYLTGGKSPRYEQLVSSGHSSTSPAS 165
           ++SP Y  GG S       SS  SS SP S
Sbjct: 78  STSPSYPGGGSSSPSPSSPSSFFSSVSPTS 107



 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 52  TPQPSPRKTSSPYYLTGGKSP 114
           +P P+PR  S+P   T    P
Sbjct: 510 SPSPNPRIASAPSSSTSSSPP 530


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 152 RPRRQGSWAHRVRTQAPSRTPVPTMIG 232
           RP+R  S    V +++P+ T  PTM G
Sbjct: 584 RPQRACSTTGGVPSKSPTLTHSPTMYG 610


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 122 NNW*AVGTVVRPRRQGSWAH 181
           N W  V  VVR + + +W H
Sbjct: 51  NKWSKVCIVVRRKLEENWIH 70


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 391 NDQQLTHHDSKTSLASLQTENST 459
           N+Q  T HD + +L S  T  ST
Sbjct: 150 NEQGQTWHDLRVALTSELTAAST 172


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -1

Query: 344 CTMLSERFTLPTRVFAMSRTGSSRLWHRCWVSTVSF 237
           C +  + F +P R+    RT +    ++C   + SF
Sbjct: 94  CNICGKTFAVPARLTRHYRTHTGEKPYQCEYCSKSF 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.126    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,290
Number of Sequences: 438
Number of extensions: 3332
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.3 bits)