Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1274
         (799 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      25   0.70 
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    22   6.5  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    22   6.5  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   6.5  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   6.5  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   8.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   8.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   8.6  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   8.6  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = -1

Query: 541 SGLGSVLINEVVLVSYAAYDTRY 473
           +G+G++++N+VV   YA  D+++
Sbjct: 234 TGVGTLVVNDVVASCYATIDSQW 256


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 182 FAWCPLTRSVIRI 220
           FAW PLTR+ + +
Sbjct: 49  FAWWPLTRNALLV 61


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 182 FAWCPLTRSVIRI 220
           FAW PLTR+ + +
Sbjct: 49  FAWWPLTRNALLV 61


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/57 (21%), Positives = 23/57 (40%)
 Frame = -1

Query: 787 YLYNIFVVQ*CHIISLHYSVGSVIIYTFC*RYLLLSFKYTSRPMIFTIQYQLQNACC 617
           Y Y+ F++   H++     +  + IY F   ++L +        I+   Y     CC
Sbjct: 214 YFYSAFIIFTIHLLFYCVLIILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLFCC 270



 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 725 FSYYLYFLLTISLIIFQVH 669
           + YY++ L   + IIF +H
Sbjct: 260 YFYYMHLLFCCAFIIFTMH 278


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 536 TTIVFLICVLYDSREKI 586
           T ++F+ICVL  S EKI
Sbjct: 256 TQVIFVICVLVQS-EKI 271


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -3

Query: 209 QNESRDTMRTSY*QLTYIHSQFHDH 135
           QN + + +   Y    Y H Q H H
Sbjct: 68  QNYNSNVLSNGYGYGNYYHPQLHSH 92


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -3

Query: 209 QNESRDTMRTSY*QLTYIHSQFHDH 135
           QN + + +   Y    Y H Q H H
Sbjct: 68  QNYNSNVLSNGYGYGNYYHPQLHSH 92


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -3

Query: 209 QNESRDTMRTSY*QLTYIHSQFHDH 135
           QN + + +   Y    Y H Q H H
Sbjct: 68  QNYNSNVLSNGYGYGNYYHPQLHSH 92


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -3

Query: 209 QNESRDTMRTSY*QLTYIHSQFHDH 135
           QN + + +   Y    Y H Q H H
Sbjct: 68  QNYNSNVLSNGYGYGNYYHPQLHSH 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,450
Number of Sequences: 336
Number of extensions: 3534
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)