Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1274
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    32   0.083
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    27   2.4  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    26   7.2  

>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 32.3 bits (70), Expect = 0.083
 Identities = 12/37 (32%), Positives = 25/37 (67%)
 Frame = +3

Query: 429  DFNIIIPIYSLVIMK*RVSYAAYETKTTSLIRTDPKP 539
            D++I IP+ + V++  ++S+ AYE   + L++ +P P
Sbjct: 1043 DYSIFIPMVNKVLVSHKISHPAYELLVSRLLKGEPLP 1079


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -1

Query: 274 VVYIQNYIEFSRNSRIEFNSNYRTSQGTPCEPAINN*HTFIHNSTITFQKPTI*FID--Q 101
           VV I N   FS   +  F S ++   G P E  I   HT   +++  F       +D   
Sbjct: 708 VVSISN--SFSSGLKKAFGSLFKNVSGLPAETEIAYHHTLSASNSYVFTD----LVDNPD 761

Query: 100 QLLRSTVKFFIIFNY 56
            +L+ST+K+  +F +
Sbjct: 762 SMLKSTLKYRFVFKF 776


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 527 RPQTTIVFLICVLYDSREKIYDPLLTMKLIT 619
           RPQ +  FL+ +  DS E IYD L    +I+
Sbjct: 212 RPQLSSCFLVTMKDDSIEGIYDTLKMCAMIS 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,498
Number of Sequences: 5004
Number of extensions: 58755
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)