Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1274
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1261 + 25266976-25267169,25267275-25268235,25268335-252684...    30   2.5  
06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,344...    30   2.5  
02_05_1133 + 34346894-34347121,34347222-34347283,34347373-343474...    29   4.3  
01_06_0568 + 30305008-30305170,30305277-30305341,30306599-303067...    28   7.5  

>07_03_1261 +
           25266976-25267169,25267275-25268235,25268335-25268430,
           25269154-25269290,25269394-25269601
          Length = 531

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -3

Query: 731 RRFSYYLYFLLTISL--IIFQVHFKTDDIHN 645
           R+F+  L   + +SL  I F+VHFKT D HN
Sbjct: 397 RKFANSLTIAVALSLGWITFEVHFKTTDEHN 427


>06_01_0485 -
           3444240-3444398,3444507-3444572,3444644-3444724,
           3444823-3444900,3444980-3445075,3445363-3445405,
           3445498-3445571,3445693-3445781,3445887-3445935,
           3446171-3446227,3446309-3446425,3448633-3448698,
           3449140-3449196,3449271-3449363,3449515-3449662,
           3449753-3449902,3449979-3450181,3450319-3450438,
           3450530-3450694,3450784-3450870,3450951-3451100,
           3451225-3451365,3451399-3451569,3452015-3452091,
           3452175-3452415,3452495-3452758,3452913-3453000,
           3453099-3453481
          Length = 1170

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 527 RPQTTIVFLICVLYDSREKIYDPLLTMKLIT 619
           RPQ +  FLIC+  DS E IYD L    +I+
Sbjct: 243 RPQLSSCFLICMKDDSIEGIYDTLKECAVIS 273


>02_05_1133 +
           34346894-34347121,34347222-34347283,34347373-34347460,
           34348005-34348268,34348346-34348586,34348672-34348748,
           34348837-34349007,34349084-34349176,34349257-34349406,
           34349491-34349577,34349656-34349820,34349900-34350019,
           34350244-34350446,34350547-34350696,34350779-34350926,
           34351046-34351129,34351207-34351308
          Length = 810

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 527 RPQTTIVFLICVLYDSREKIYDPL 598
           RPQ +  FLIC+  DS E IYD L
Sbjct: 212 RPQLSSCFLICMNDDSIEGIYDTL 235


>01_06_0568 +
           30305008-30305170,30305277-30305341,30306599-30306769,
           30307409-30307978,30308085-30308444,30308496-30308774
          Length = 535

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 609 SLLQHAFCNWYWIVNIIGLEVYLKDN 686
           ++L+ A C W W VN++ L+ + + N
Sbjct: 390 NVLESARCAWSWGVNVVNLDAWRRTN 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,441,960
Number of Sequences: 37544
Number of extensions: 284279
Number of successful extensions: 351
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)