Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1274
         (799 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119595-1|AAM50249.1|  377|Drosophila melanogaster LD18062p pro...    29   5.6  
AE013599-597|AAM68851.1|  377|Drosophila melanogaster CG11508-PB...    29   5.6  
AE013599-596|AAF59128.3|  377|Drosophila melanogaster CG11508-PA...    29   5.6  

>AY119595-1|AAM50249.1|  377|Drosophila melanogaster LD18062p
           protein.
          Length = 377

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 422 PFRF*YHYTYLFSSNNEITCVVCRV*NQNYFIN*DRPQ 535
           P R  Y Y + FS+ N  TC +C + + ++ +N  R Q
Sbjct: 289 PDRSLYPYPHAFSTFNRRTCYMCGIRSYSFIVNQSRRQ 326


>AE013599-597|AAM68851.1|  377|Drosophila melanogaster CG11508-PB,
           isoform B protein.
          Length = 377

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 422 PFRF*YHYTYLFSSNNEITCVVCRV*NQNYFIN*DRPQ 535
           P R  Y Y + FS+ N  TC +C + + ++ +N  R Q
Sbjct: 289 PDRSLYPYPHAFSTFNRRTCYMCGIRSYSFIVNQSRRQ 326


>AE013599-596|AAF59128.3|  377|Drosophila melanogaster CG11508-PA,
           isoform A protein.
          Length = 377

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 422 PFRF*YHYTYLFSSNNEITCVVCRV*NQNYFIN*DRPQ 535
           P R  Y Y + FS+ N  TC +C + + ++ +N  R Q
Sbjct: 289 PDRSLYPYPHAFSTFNRRTCYMCGIRSYSFIVNQSRRQ 326


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,819,350
Number of Sequences: 53049
Number of extensions: 555890
Number of successful extensions: 640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3716337612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)