Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1274
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.35 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.35 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   1.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   4.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   4.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   4.3  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -3

Query: 740 PL*RRFSYYLYFLLTISL----IIFQVHFKTDDIHNPIPVTKRV 621
           PL  ++  +   L++IS+    ++  VHF++   H   P  KRV
Sbjct: 305 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRV 348


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -3

Query: 740 PL*RRFSYYLYFLLTISL----IIFQVHFKTDDIHNPIPVTKRV 621
           PL  ++  +   L++IS+    ++  VHF++   H   P  KRV
Sbjct: 305 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRV 348


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -3

Query: 740 PL*RRFSYYLYFLLTISL----IIFQVHFKTDDIHNPIPVTKRV 621
           PL  ++  +   L+T+S+     +  VHF++   HN  P  ++V
Sbjct: 310 PLLGKYLLFTMILVTLSIWITVCVLNVHFRSPSTHNMSPWVRQV 353


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 247 FSRNSRIEFNSNYRTSQGTPCEPAINN*HTFIHNS 143
           F  +S IE   N + S+G+     +NN  T+I N+
Sbjct: 170 FFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVNT 204


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 247 FSRNSRIEFNSNYRTSQGTPCEPAINN*HTFIHNS 143
           F  +S IE   N + S+G+     +NN  T+I N+
Sbjct: 170 FFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVNT 204


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 151 HNSTITFQKPTI*FIDQQLLRSTVKFFIIFNYDVFRN 41
           H  TITF    +  +  Q+  +   F ++ N D FRN
Sbjct: 78  HCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRN 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,363
Number of Sequences: 438
Number of extensions: 4561
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)