Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1274
         (799 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42660.1 68418.m05197 expressed protein contains Pfam profile...    29   3.6  
At2g37035.1 68415.m04543 expressed protein                             29   4.7  
At2g21790.1 68415.m02590 ribonucleoside-diphosphate reductase sm...    28   8.3  

>At5g42660.1 68418.m05197 expressed protein contains Pfam profile
           PF04765: Protein of unknown function (DUF616)
          Length = 463

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -3

Query: 758 MPHHFAPL*RRFSYYLYFLLTISLIIFQ---VHFKTDDIHNP 642
           +P H   L  R+   L FLL + L++F+   + FK+ D+  P
Sbjct: 41  LPRHVLRLFVRYWVVLVFLLAVGLLVFESTRIGFKSSDLKKP 82


>At2g37035.1 68415.m04543 expressed protein
          Length = 433

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 798 PLLIIYITFLLFNDATSFRSIIASVQLLSILFVD 697
           PL  I++TFLLF    SF S++    LL   FVD
Sbjct: 36  PLTFIFLTFLLF----SFHSLVDHCSLLLTSFVD 65


>At2g21790.1 68415.m02590 ribonucleoside-diphosphate reductase small
           chain, putative / ribonucleotide reductase, putative
           similar to ribonucleotide reductase GI:4151068 from
           [Nicotiana tabacum]
          Length = 816

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 527 RPQTTIVFLICVLYDSREKIYDPLLTMKLIT 619
           RPQ +  FL+C+  DS E IY+ L    +I+
Sbjct: 212 RPQLSSCFLVCMKDDSIEGIYETLKECAVIS 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,372,401
Number of Sequences: 28952
Number of extensions: 262628
Number of successful extensions: 344
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)