Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1273
         (779 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VZ21 Cluster: CG1397-PA; n=4; Diptera|Rep: CG1397-PA ...   100   4e-20
UniRef50_UPI00015B592A Cluster: PREDICTED: similar to conserved ...    89   1e-16
UniRef50_Q3IUQ4 Cluster: Predicted iron-sulfur oxidoreductase; n...    36   1.1  
UniRef50_O67662 Cluster: Uncharacterized protein aq_1793; n=1; A...    36   1.1  
UniRef50_Q290D4 Cluster: GA21122-PA; n=1; Drosophila pseudoobscu...    33   6.1  

>UniRef50_Q9VZ21 Cluster: CG1397-PA; n=4; Diptera|Rep: CG1397-PA -
           Drosophila melanogaster (Fruit fly)
          Length = 151

 Score =  100 bits (240), Expect = 4e-20
 Identities = 43/84 (51%), Positives = 54/84 (64%)
 Frame = +3

Query: 255 PLPFNISDPEAEHGVHITACPSGWCAKRIQGTTGTFRTDDYGAVTERSCLQQPPSDYEER 434
           P  FN +D E E GV    C SGWC K I+G  GT+  DDY    +R C+Q+ P D  +R
Sbjct: 41  PFTFNATDVEQEPGVAAIPCASGWCGKVIEGG-GTYAIDDYDLAIQRMCVQRGPDDNMDR 99

Query: 435 CAYTMWKYKRVYVCFCNGDLCNSA 506
           CA T++ YK+VY+CFC GDLCN A
Sbjct: 100 CADTIYNYKKVYMCFCQGDLCNGA 123



 Score = 42.7 bits (96), Expect = 0.010
 Identities = 22/37 (59%), Positives = 24/37 (64%)
 Frame = +1

Query: 145 VLLTTVLAISYLKVEISCLSRRCIQCRSRGELGSCGD 255
           +LL  +  IS   V I  L RRC QCRSRGELGSC D
Sbjct: 6   LLLAVIFLISL--VSIDGLLRRCYQCRSRGELGSCKD 40


>UniRef50_UPI00015B592A Cluster: PREDICTED: similar to conserved
           hypothetical protein; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to conserved hypothetical protein -
           Nasonia vitripennis
          Length = 150

 Score = 89.0 bits (211), Expect = 1e-16
 Identities = 40/84 (47%), Positives = 50/84 (59%)
 Frame = +3

Query: 255 PLPFNISDPEAEHGVHITACPSGWCAKRIQGTTGTFRTDDYGAVTERSCLQQPPSDYEER 434
           P   N +      GV I  C SGWC+K I+        ++YG  TER CLQ+   D EER
Sbjct: 47  PRDLNATQASKLKGVEIVPCASGWCSKIIESQN---LNNEYGVATERLCLQRGVDDNEER 103

Query: 435 CAYTMWKYKRVYVCFCNGDLCNSA 506
           CA+T +  K +Y+CFCNGDLCNSA
Sbjct: 104 CAFTKYNNKIIYMCFCNGDLCNSA 127


>UniRef50_Q3IUQ4 Cluster: Predicted iron-sulfur oxidoreductase; n=3;
           Halobacteriaceae|Rep: Predicted iron-sulfur
           oxidoreductase - Natronomonas pharaonis (strain DSM 2160
           / ATCC 35678)
          Length = 324

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +3

Query: 258 LPFNISDPEAEHGVHITACPSGWCAKRIQGTTGTFRTDDYGAVTERSCLQQPPSDYEERC 437
           +P  + DP+     H  A   GW A  ++G    ++   YG  + R     P     ERC
Sbjct: 4   MPKQVGDPDYHSENHTAAQTCGWTANALRGEGRCYKNHFYGIQSHRCIQMTPVVKCNERC 63

Query: 438 AYTMWK 455
            +  W+
Sbjct: 64  VF-CWR 68


>UniRef50_O67662 Cluster: Uncharacterized protein aq_1793; n=1;
           Aquifex aeolicus|Rep: Uncharacterized protein aq_1793 -
           Aquifex aeolicus
          Length = 269

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = +1

Query: 508 HNEDVFSCIIAQYFYLHKELYLLIHIDNFIFDLMLLLIFSFIIHN 642
           H  +V+S  + Q F L  EL +L  + NF+F + ++ +F+F IHN
Sbjct: 19  HALNVWSITLFQNFRLTAELIILFTLLNFLFLIPVMNVFAFFIHN 63


>UniRef50_Q290D4 Cluster: GA21122-PA; n=1; Drosophila
           pseudoobscura|Rep: GA21122-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 148

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +3

Query: 327 CAKRIQGTTGTFRTDDYGAVTERSCLQQPPSDYEERCAYTMWKYKR-VYVCFCNGDLCNS 503
           CA+++  TT  F    +    E+S +++P   YEE C      ++  V +C C GDLCN+
Sbjct: 80  CAQQLS-TTHVFVNKSW---EEKSVVEEP---YEEGCIEEKVNFRNTVLLCHCRGDLCNA 132

Query: 504 A 506
           +
Sbjct: 133 S 133


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 781,168,120
Number of Sequences: 1657284
Number of extensions: 16196660
Number of successful extensions: 36301
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36254
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)