Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1273
         (779 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    23   2.1  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   6.3  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    21   8.4  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.4  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
 Frame = +1

Query: 403 FNSLLVIMKKDVRIPCGNIKGYMYVSVMV----ICAIQLHNEDVFSCIIAQYFYLHKELY 570
           +   L +    + +   NI  YMY  ++     +  + +  E+ FS  I +   LHK L 
Sbjct: 30  YQFFLAVQYPRIVVSTFNIVFYMYTLILEERFKLINLIIKQEEFFSPKIKRMVLLHKTLV 89

Query: 571 LLIHIDNFIFDLMLLL 618
            +    N +F   LLL
Sbjct: 90  RVAKSLNQVFAPQLLL 105


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 69  ISYMHVLI*YLLAIKQLLVHKNETRSIVDNCASDKL 176
           I + + L+ YL+    L+ +K   R I+DN + + L
Sbjct: 159 IHFFYQLLLYLITDMILMRYKELNRVILDNMSRNHL 194


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 148 ILRVSFLCTSNCLIASKYYINTCM 77
           IL+++ LC   CL+A+   I TC+
Sbjct: 3   ILQIAHLCAQFCLLAA---IFTCV 23


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 676 LCCNFYLVFSYVW*LTWYQFY 738
           L C +Y  ++++  L  Y FY
Sbjct: 97  LLCTYYFYYAFIILLCVYYFY 117


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,440
Number of Sequences: 336
Number of extensions: 4808
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)