Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1273
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0715 + 26552962-26553510,26553578-26555746                       29   4.1  
11_06_0095 - 20030237-20031711,20031731-20033057                       29   4.1  
07_03_0856 - 22037345-22037665,22037962-22038108,22038201-220389...    29   4.1  
07_03_1752 - 29218348-29218524,29218593-29218736,29218957-292191...    29   5.5  
02_02_0656 - 12683240-12683409,12684309-12684444                       29   5.5  
03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717...    28   7.2  
02_05_1118 + 34241819-34242217,34242350-34242522,34243499-342436...    28   9.6  

>11_06_0715 + 26552962-26553510,26553578-26555746
          Length = 905

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 565 ILYEDKNTEQ*YRRKHLHCGAELHKSPLQKHTYTLLYFHMVY--AHLSS 425
           +L+  + TE+ ++R H     EL  +P  +H   +LY   +Y   HL S
Sbjct: 366 VLFVCEKTEEEFKRIHNQLDWELVNNPSLEHVRNILYLSYIYLPTHLKS 414


>11_06_0095 - 20030237-20031711,20031731-20033057
          Length = 933

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 565 ILYEDKNTEQ*YRRKHLHCGAELHKSPLQKHTYTLLYFHMVY 440
           +L+    TE+ +RR H     EL  +P  +H   +LY   +Y
Sbjct: 395 LLFVRDKTEEEFRRIHNQLDWELINNPSMEHVRNILYLSYIY 436


>07_03_0856 -
           22037345-22037665,22037962-22038108,22038201-22038978,
           22039092-22039384,22039663-22039758
          Length = 544

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 23/80 (28%), Positives = 34/80 (42%)
 Frame = -2

Query: 319 DGQAVICTPCSASGSLILKGRGLHMTQALLEIYTVYISYLNS*FQL*GNLSLAQLSTILR 140
           DGQ    TP     SL   G+GL +T+  L   T+ I      F+    LSL ++     
Sbjct: 202 DGQRRSTTPYEFPLSLFTDGKGLSLTELKLCECTLNIPIGLDGFKSLVKLSLTRMPISED 261

Query: 139 VSFLCTSNCLIASKYYINTC 80
           +      NCL    +++N C
Sbjct: 262 MIHTLFENCLKLECFHLNHC 281


>07_03_1752 -
           29218348-29218524,29218593-29218736,29218957-29219148,
           29219225-29219440,29219873-29220010,29220137-29220232,
           29221204-29221357,29221976-29222098,29222291-29222418,
           29222669-29222773,29223396-29223437,29223631-29223746,
           29223805-29223916
          Length = 580

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 430 KDVRIPCGNIKGYMYVSVMVICAIQLHNEDVFSCIIAQYFYLHKELY 570
           KD  I C ++     V V V  A+Q   ++   C  A+ FY+HK++Y
Sbjct: 279 KDAFIVCEDVDLPSVVQVAVRAALQSSGQN---CAGAERFYVHKDIY 322


>02_02_0656 - 12683240-12683409,12684309-12684444
          Length = 101

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 411 PPSDYEERCAYTMWKYK 461
           PPS Y++RCA+  W +K
Sbjct: 11  PPSRYDDRCAWPPWVFK 27


>03_05_0062 +
           20370608-20370977,20371062-20371541,20371661-20371731,
           20371836-20371912,20372076-20372223,20372346-20372507,
           20372743-20372940
          Length = 501

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 258 LPFNISDPEAEHGVH-ITACPSGWCAKRIQGTTGTFRTDDYGAVT 389
           +P  ++ PE     +  TA PSG  +    GTT  F  D+  AVT
Sbjct: 121 VPERVASPEVYQPSNGPTASPSGTSSYEFSGTTSWFTYDELAAVT 165


>02_05_1118 +
           34241819-34242217,34242350-34242522,34243499-34243660,
           34243762-34243903,34244320-34244544,34244649-34244711,
           34244817-34244891,34245198-34245404,34247274-34247465,
           34247515-34247634
          Length = 585

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 317 WTSSNMHTMFCFRVTYIKG*RSPHDPSSPRDLHCIHL 207
           W  +NM + + F V +++  +     +SPR +HC +L
Sbjct: 146 WPLNNMESSYKFMVKHVQLWKVAFHTTSPRWVHCFYL 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,464,946
Number of Sequences: 37544
Number of extensions: 421056
Number of successful extensions: 815
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)