Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1273
         (779 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578807-1|AAT07312.1|  438|Anopheles gambiae punt protein.            27   0.86 
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    25   3.5  
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    23   8.0  

>AY578807-1|AAT07312.1|  438|Anopheles gambiae punt protein.
          Length = 438

 Score = 26.6 bits (56), Expect = 0.86
 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
 Frame = +3

Query: 384 VTERSCLQQPPSDYEERCA-YTMWKYKRVYVCFCNGDLCN 500
           VT + C   P       C   T +  K +  C C G +CN
Sbjct: 3   VTLKGCFTNPTECNNTECIDTTTYAKKNLNYCCCRGSMCN 42


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
           anion exchanger protein.
          Length = 1102

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 487 VICAIQLHNEDVFSCIIAQYFYLHKELYLLIHI 585
           ++C I    E+ F+C+IA  F ++K +  + HI
Sbjct: 631 LVCYITRFTEENFACLIAVIF-IYKAIENVFHI 662


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 435 CAYTMWKYKRVYVCFCNGDLCN 500
           C  T     R + C C+GD CN
Sbjct: 131 CVSTTETPTRHFFCCCSGDNCN 152


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 861,286
Number of Sequences: 2352
Number of extensions: 18100
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81497388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)