Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1273
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen prot...    31   1.2  
AL023828-27|CAI46622.1|  308|Caenorhabditis elegans Hypothetical...    30   2.1  
Z69884-9|CAI79224.1|  155|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U55365-2|AAA98568.1|  184|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AF043702-5|AAK21493.1|  205|Caenorhabditis elegans Hypothetical ...    28   6.5  
AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical ...    28   8.6  

>AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen protein
           69 protein.
          Length = 394

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = -2

Query: 175 NLSLAQLSTILRVSFLCTSNCLIASKYYINTCM*LIIMFLDELSNF 38
           +L   QLST++RVSF       IAS   I+ C+ LI+M   E+S F
Sbjct: 8   SLKKFQLSTVIRVSF-------IASSLLISLCLFLIMMTSREISEF 46


>AL023828-27|CAI46622.1|  308|Caenorhabditis elegans Hypothetical
           protein Y17G7B.23 protein.
          Length = 308

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 462 RVYVCFCNGDLCNSAPQ*RCFLLYYCSVFLSS 557
           R   C+C G+LCNS+P  +       S+F +S
Sbjct: 272 RANQCYCQGELCNSSPPSQLASTLLLSIFSTS 303


>Z69884-9|CAI79224.1|  155|Caenorhabditis elegans Hypothetical
           protein F31F6.8 protein.
          Length = 155

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/76 (26%), Positives = 27/76 (35%)
 Frame = +3

Query: 276 DPEAEHGVHITACPSGWCAKRIQGTTGTFRTDDYGAVTERSCLQQPPSDYEERCAYTMWK 455
           D     GV    C +G C K I      F+         RSC+          C      
Sbjct: 67  DQALRDGVRSNECSNGVCMKMI------FQEKSGINHVWRSCIPNAKEQIRSDCTKITSG 120

Query: 456 YKRVYVCFCNGDLCNS 503
              + VC C+G+LCN+
Sbjct: 121 EGNLEVCTCDGNLCNN 136


>U55365-2|AAA98568.1|  184|Caenorhabditis elegans Hypothetical
           protein C12D5.4 protein.
          Length = 184

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 456 YKRVYVCFCNGDLCNS 503
           Y  VY+C+CN  LCN+
Sbjct: 152 YASVYLCYCNTHLCNT 167


>AF043702-5|AAK21493.1|  205|Caenorhabditis elegans Hypothetical
           protein W03D8.7 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 454 NIKGYMYVSVMVICAIQLHNEDVFSCIIAQYFYLHKELYLLIHID 588
           N +  MYV  M+I A   H  +V SC IA   + H   ++ I ++
Sbjct: 113 NYEDIMYVCNMLIIAEDAHFTNVQSCCIATLVFYHVRDFIRIIVN 157


>AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical
           protein Y47D7A.6 protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 157 LSTILRVSFLCTSNCLIASKYYINTCM*LIIMFLDELSNFHFL 29
           +  I +VSF C   CL  S+YY       I +F ++  N H +
Sbjct: 137 IGQITQVSFKCPGLCLNTSEYYDKKLQRRIAIFSNDHFNSHLV 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,605,053
Number of Sequences: 27780
Number of extensions: 411818
Number of successful extensions: 943
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)