Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1273
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    25   0.60 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   4.2  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   9.7  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   9.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.7  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -3

Query: 552 IKILSNNTGENIFIVELNCTNHHYRNIHIPFYISTWYTHIFLHNH*EAVEDRTFLL 385
           + +L N TG  +F       +  Y+++H+  +I   +   FL  + ++    TFLL
Sbjct: 36  VNLLKNRTGRYMFTY----LHLLYQDVHVMIWIGFGFLMTFLRRYGQSAVGLTFLL 87


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 293 WCAYYCLSIWMVCQENS 343
           W  YY +S+W     NS
Sbjct: 273 WTPYYVMSLWYWIDRNS 289


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 81  HVLI*YLLAIKQLLVHKNETRS 146
           H L+ + L +KQL+V  N+  S
Sbjct: 63  HALLAFTLGVKQLIVGVNKMDS 84


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 81  HVLI*YLLAIKQLLVHKNETRS 146
           H L+ + L +KQL+V  N+  S
Sbjct: 79  HALLAFTLGVKQLIVGVNKMDS 100


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 81  HVLI*YLLAIKQLLVHKNETRS 146
           H L+ + L +KQL+V  N+  S
Sbjct: 136 HALLAFTLGVKQLIVGVNKMDS 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,063
Number of Sequences: 438
Number of extensions: 5130
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)