Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1273
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45400.1 68416.m04901 exostosin family protein contains Pfam ...    29   2.6  
At2g40050.1 68415.m04921 DC1 domain-containing protein contains ...    28   6.0  

>At3g45400.1 68416.m04901 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 475

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/76 (27%), Positives = 40/76 (52%)
 Frame = -1

Query: 536 IIQEKTSSLWS*IAQITITETYIYPFIFPHGIRTSFFIITRRLLKTGPFCYRTIIISSKC 357
           I +E+ + +W+ + ++   E Y Y F FP  +  +  +I + + +  P   +  I  S+ 
Sbjct: 398 ITKEEWTRMWNRLKEV---EKY-YEFHFPSKVDDAVQMIWQAIARKVPGV-KMRIHKSRR 452

Query: 356 ASGSLNSLGTPSRWTS 309
            SGS++  G  SRW+S
Sbjct: 453 YSGSVSETGKESRWSS 468


>At2g40050.1 68415.m04921 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 609

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 493 CAIQLHNEDVFSCIIAQYFYLHKELY--LLIHIDNF 594
           C+I+LH E + S +I ++ Y H E Y  L  H DNF
Sbjct: 118 CSIKLHKECIQSPLIIKHPY-HPEHYLQLFFHDDNF 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,119,117
Number of Sequences: 28952
Number of extensions: 361559
Number of successful extensions: 782
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)