Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1269
         (742 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    73   7e-12
UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1; ...    45   0.002
UniRef50_A0CHH4 Cluster: Chromosome undetermined scaffold_181, w...    36   1.4  
UniRef50_Q9SVV9 Cluster: Putative uncharacterized protein F15J5....    33   9.7  
UniRef50_Q54JR2 Cluster: ABC transporter C family protein; n=8; ...    33   9.7  

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 72.9 bits (171), Expect = 7e-12
 Identities = 34/48 (70%), Positives = 37/48 (77%)
 Frame = +3

Query: 366 LADPADFVVPQSINKRPKLLYKINLTQTKGIRPTGGTHQRKNKIVIFI 509
           LADPADFVVPQSINKRPK LYKINL QTKGIR TG T + K     ++
Sbjct: 22  LADPADFVVPQSINKRPKHLYKINLKQTKGIRQTGDTSKEKQNCYFYL 69


>UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 47

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 20/26 (76%), Positives = 22/26 (84%)
 Frame = -3

Query: 617 LKFENGWTDLANFGLKLFVEVQKRFK 540
           LK ENGWTDLANFGL+L VEVQ+  K
Sbjct: 20  LKLENGWTDLANFGLELPVEVQRGLK 45


>UniRef50_A0CHH4 Cluster: Chromosome undetermined scaffold_181,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_181,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 321

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 153 LFLFTYLIKIPLLFYYGLCTYIIYLHMYTIQHLKIFRNFNSNS 281
           +FLFT+ +   + F  G+C  I YL      H+K+  NF++NS
Sbjct: 53  IFLFTFELINSICFSIGICCLIQYLKWKINVHMKVIFNFDANS 95


>UniRef50_Q9SVV9 Cluster: Putative uncharacterized protein F15J5.90;
           n=2; Arabidopsis thaliana|Rep: Putative uncharacterized
           protein F15J5.90 - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 715

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +2

Query: 578 QN*PNRSSRSRILARLTNSNSFIYSFIY--IDFRN 676
           +N PN+ +R+ +LA +   NS  Y F+Y  IDF+N
Sbjct: 519 KNIPNKYTRNMLLAAIDEKNSGTYDFLYLPIDFKN 553


>UniRef50_Q54JR2 Cluster: ABC transporter C family protein; n=8;
            Dictyostelium discoideum|Rep: ABC transporter C family
            protein - Dictyostelium discoideum AX4
          Length = 1412

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
 Frame = +1

Query: 502  FLLIP--SIFIVFYFLNLFWTSTNNLRPKL-AKSVQP-FSNFSET 624
            FLL+P   I I+FYFL  F+  T+    +L A S  P FS+FSET
Sbjct: 883  FLLVPLAPICIIFYFLQFFYRYTSRELQRLEAISRSPIFSHFSET 927


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,453,805
Number of Sequences: 1657284
Number of extensions: 13634092
Number of successful extensions: 30204
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30186
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)