Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1269
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   6.5  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   6.5  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    25   8.6  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   8.6  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/68 (23%), Positives = 34/68 (50%)
 Frame = +3

Query: 105  LNKITTASFLAGLPEPLFLFTYLIKIPLLFYYGLCTYIIYLHMYTIQHLKIFRNFNSNSL 284
            L ++  +  + G+ +PL ++ ++ K P LF +  C++ I   +  +  L  F + ++   
Sbjct: 1916 LPRLVISEDVQGISQPLTVYQFICKAPDLF-FSCCSHFIVPMVNALPKLVSFSSASTEPR 1974

Query: 285  TR*L*IVQ 308
               L IVQ
Sbjct: 1975 KLALDIVQ 1982


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = +3

Query: 117 TTASFLAG--LPEPLFLFT----YLIKIPLLFYYGLCTYIIYLHMY 236
           T  SF  G  LP+P+F+      Y I  PL+  +GL  +II   +Y
Sbjct: 625 TPDSFSVGIFLPQPMFIMLICLCYSIISPLILVFGLIYFIIGFLVY 670


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +1

Query: 493 KL*FLLIPSIFIVFYFLNLF 552
           KL  LLIPSI +VF F  LF
Sbjct: 12  KLLRLLIPSIIVVFAFAALF 31


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 714 NILVSFLLRRGSEFRKSI*MNEYINELLFVSLAK 613
           N +V  +LR GSE  K    +  I+ LLF+S  K
Sbjct: 591 NYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHK 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,880
Number of Sequences: 5004
Number of extensions: 62786
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)