Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1269
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1328 + 26170248-26170493,26170702-26170798,26171325-261713...    29   5.1  
05_01_0253 + 1934043-1934201,1934456-1934536,1935008-1935199,193...    28   6.8  
01_01_0998 - 7894254-7894515,7895133-7895270,7896049-7896246,789...    28   9.0  

>08_02_1328 +
           26170248-26170493,26170702-26170798,26171325-26171342,
           26171566-26171666,26173486-26173562,26173736-26173802,
           26176467-26176577,26176652-26176749,26176834-26176903
          Length = 294

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +3

Query: 72  LSVLTRHGVLTLNKIT--TASFLAGLPEPL-FLFTYLIKIPLLFY 197
           L++   H    L+ +T    ++L  LPEP  F+FT+   +PL+F+
Sbjct: 178 LTLFRLHRFFFLDDLTGFEITYLLELPEPFSFIFTWFAALPLIFW 222


>05_01_0253 +
           1934043-1934201,1934456-1934536,1935008-1935199,
           1935313-1935548,1935638-1936220
          Length = 416

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 123 ASFLAGLPEPLFLFTYLIKIPLLFYYGL-CTYIIYLHMYTIQHLKIFRNFNSNS 281
           A+  A  P P+      +++P + YYG+ C  + Y  +++++  K    F   S
Sbjct: 31  AAAAAVAPPPVVEVEVAVQVPHMVYYGVYCLSVYYTRLFSVRGCKRLTQFGLES 84


>01_01_0998 -
           7894254-7894515,7895133-7895270,7896049-7896246,
           7896334-7896786,7896877-7897098,7898100-7898227,
           7899325-7899432
          Length = 502

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 446 LC*VYFIQKFRSFIYRLRHYEV 381
           +C +YFIQ FRSF++    Y++
Sbjct: 29  VCLIYFIQGFRSFVWTAVSYQM 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,460,308
Number of Sequences: 37544
Number of extensions: 327714
Number of successful extensions: 614
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)