Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1269
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33432| Best HMM Match : 7tm_1 (HMM E-Value=1e-15)                   31   1.3  
SB_23117| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_33432| Best HMM Match : 7tm_1 (HMM E-Value=1e-15)
          Length = 278

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 445 KQKESVRRGGHIKGKTKL*FLLIPSIFIVFYFLNLFWTSTNNL--RPKLAKSVQPFSN 612
           KQ     R   I+GKT   FLL+ SIFI+ +   ++ T T  +  RP L     PF++
Sbjct: 179 KQTRDGARRASIEGKTINVFLLVVSIFILSWAPIIYMTITEYIASRPDLIPHQLPFAS 236


>SB_23117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 593 RSSRSRILARLTNSNSFIYSFIYIDFRNSEPRRSKNETNIFFNSGTK 733
           R SRSR + ++ +S   IY+   + F +S+ ++  +E  +   SGT+
Sbjct: 59  RFSRSRDVGQVLSSEDAIYADYDLIFASSDTQKRSSENKMLVFSGTQ 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,113,418
Number of Sequences: 59808
Number of extensions: 408793
Number of successful extensions: 762
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)