Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1269
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83231-4|CAB05752.1|  356|Caenorhabditis elegans Hypothetical pr...    32   0.49 
U80952-3|AAB38093.1|  279|Caenorhabditis elegans Hypothetical pr...    32   0.49 
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ...    28   6.0  

>Z83231-4|CAB05752.1|  356|Caenorhabditis elegans Hypothetical
           protein F57G9.4 protein.
          Length = 356

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 156 FLFTYLIKIPLLFYYGLCTYIIYLHMYTIQHLKIF 260
           F F  ++ I  LF Y +C YI+ L++Y I  +K+F
Sbjct: 21  FNFQLVLSIVELFSYLICAYILTLNIYIILKIKMF 55


>U80952-3|AAB38093.1|  279|Caenorhabditis elegans Hypothetical
           protein F54H5.3 protein.
          Length = 279

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +3

Query: 303 VQKTVIETWKYYPNIENFIK*LADPADFVVPQSINKRPKLLYKINLTQTKGIRP 464
           +Q T+I+  KY  N +  ++ +  P DF   + I K+P  L     T+ K +RP
Sbjct: 85  IQITLIDGTKYQSNHQFIVQAMPSPGDFADRKFIWKQPNFLGIFTNTRVKTMRP 138


>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
           protein F25G6.9 protein.
          Length = 1373

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 556 TSTN-NLRPKLAKSVQPFSNFSETNEQQFIYIFIHLYRFPKF 678
           +STN +L+ ++ K +  F   +  N  QF+  FI LY+ P F
Sbjct: 339 SSTNPSLQERICKLIALFVKKAPENADQFVLYFITLYQKPFF 380


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,466,645
Number of Sequences: 27780
Number of extensions: 344173
Number of successful extensions: 854
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)