Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1269
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   4.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   7.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   7.0  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/43 (25%), Positives = 16/43 (37%)
 Frame = +1

Query: 535 YFLNLFWTSTNNLRPKLAKSVQPFSNFSETNEQQFIYIFIHLY 663
           ++L   W    NLR  + K +       +T     I    HLY
Sbjct: 88  FYLGKEWKKNLNLRDSVTKYLIHLKEIEDTEPILLIAYIYHLY 130


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 547 LFWTSTNNLRPKLAKSVQPFSNFSETNEQQFIY 645
           LF+    +L  K+ K+V P S   +   ++F Y
Sbjct: 282 LFYYQLTDLYKKIKKAVPPLSLHGQLLWREFFY 314


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 623 LTNSNSFIYSFIYIDF 670
           LTNS   IY + YID+
Sbjct: 25  LTNSLKVIYEWKYIDY 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,221
Number of Sequences: 438
Number of extensions: 4558
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)