Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1269
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ...    33   0.26 
At4g19090.1 68417.m02814 hypothetical protein contains Pfam doma...    31   1.1  
At5g09640.1 68418.m01115 sinapoylglucose:choline sinapoyltransfe...    30   1.4  
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ...    29   4.3  
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ...    29   4.3  
At5g52180.1 68418.m06477 expressed protein                             28   7.5  
At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing ...    28   7.5  

>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
           protein Mei2-like protein, Arabidopsis thaliana,
           gb:D86122
          Length = 785

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +2

Query: 578 QN*PNRSSRSRILARLTNSNSFIYSFIY--IDFRN 676
           +N PN+ +R+ +LA +   NS  Y F+Y  IDF+N
Sbjct: 589 KNIPNKYTRNMLLAAIDEKNSGTYDFLYLPIDFKN 623


>At4g19090.1 68417.m02814 hypothetical protein contains Pfam domain,
           PF04578: Protein of unknown function, DUF594
          Length = 751

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
 Frame = +3

Query: 162 FTYLIKIPLLFYYGLCTYIIYLHMYTIQHLKIFRNFNSNSLTR*L*IVQKTVIETWKYYP 341
           F+++  I   ++  +  +   LH Y I H+ I      N + R +  + K  +E W   P
Sbjct: 433 FSFIFSIIQTWFSNIAKWFCALHWYIIHHVIILPP-GQNQVARSIIGIFKAFVEFWFNVP 491

Query: 342 N-----IENFIK*LADPADFVVPQSINKRPKLLYKINLTQTK 452
           N     + + I  L     F   + + K  ++LY +  T TK
Sbjct: 492 NFFVYLVTSVINFLGINDLFYEIRLLQKNSQILYSLENTTTK 533


>At5g09640.1 68418.m01115 sinapoylglucose:choline
           sinapoyltransferase (SNG2) GC donor splice site at exon
           11 and 13; TA donor splice site at exon 10; similar to
           serine carboxypeptidase I precursor (SP:P37890) [Oryza
           sativa]; wound-inducible carboxypeptidase, Lycopersicon
           esculentum, EMBL:AF242849; contains Pfam profile
           PF00450: Serine carboxypeptidase; identical to cDNA
           sinapoylglucose:choline sinapoyltransferase (SNG2)
           GI:15418806
          Length = 465

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 514 PSIFIVFYFLNLFWTSTNNLRPKLAKSVQPFSNFSETNEQQFIYIF 651
           PS F   YFL+ FW +  N+R  L    +    ++  N Q   Y F
Sbjct: 318 PSCFTYRYFLSAFWANDENVRRALGVK-KEVGKWNRCNSQNIPYTF 362


>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
           protein similar to GI:6650523 from [Arabidopsis
           thaliana]
          Length = 800

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 578 QN*PNRSSRSRILARLTNSNSFIYSFIY--IDFRN 676
           +N PN+ +   +LA +   N   Y+F+Y  IDF+N
Sbjct: 658 KNIPNKYTSKMLLAAIDEKNQGTYNFLYLPIDFKN 692


>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
           protein similar to GI:6650523 from [Arabidopsis
           thaliana]
          Length = 800

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 578 QN*PNRSSRSRILARLTNSNSFIYSFIY--IDFRN 676
           +N PN+ +   +LA +   N   Y+F+Y  IDF+N
Sbjct: 658 KNIPNKYTSKMLLAAIDEKNQGTYNFLYLPIDFKN 692


>At5g52180.1 68418.m06477 expressed protein
          Length = 458

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 153 LFLFTYLIKIPLLFYYGLCTYI 218
           L L    +KI ++F +GLCTYI
Sbjct: 21  LTLVLSFVKISIIFLHGLCTYI 42


>At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing
           protein predicted proteins, Arabidopsis thaliana
          Length = 381

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 460 VRRGGHIKGKTKL*FLLIPSIFIVFYFLNLFWTSTNNLRPKLAKSVQPFSNFSET 624
           +R+ G + G +    L+  S   V      FW +TN++   L  +VQ F +F ++
Sbjct: 79  IRKFGSLSGSSNQSLLVSASPPSVLSMGTSFWENTNDMDSSLKDNVQYFLDFEDS 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,924,575
Number of Sequences: 28952
Number of extensions: 295154
Number of successful extensions: 567
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)