Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1267
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0754 + 27803143-27803517,27805441-27806832,27806910-278071...    30   2.1  
01_05_0691 + 24330491-24332269                                         30   2.1  

>04_04_0754 +
           27803143-27803517,27805441-27806832,27806910-27807164,
           27807246-27807368,27807643-27808119,27808217-27808603
          Length = 1002

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/78 (29%), Positives = 37/78 (47%)
 Frame = +2

Query: 317 VDPYLGITTHKMNIRYRPLKTNKEELKNIIKEFIHTQDYNKAYSKLANGEWIPRHFSKNK 496
           VDP L    HK+ I Y+P +T   +L  +I E   + D   +    A+G    RH    +
Sbjct: 261 VDPEL----HKITISYKPDQTGPRDLIEVI-ESAASGDLTVSIYPEADGRQQHRHGEIKR 315

Query: 497 HQQTSFETIFIVIYEFLT 550
           ++Q+   ++   I  FLT
Sbjct: 316 YRQSFLWSLVFTIPVFLT 333


>01_05_0691 + 24330491-24332269
          Length = 592

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -1

Query: 405 IMFFNSSLF-VFKGL*RIFILCVVMPRYGSTIRAVARSSYSDSSRGVIPIGSSCGALAFQ 229
           ++ F+  LF V+K   R+F+LCV +      + A     Y++    V  +G+       +
Sbjct: 160 VILFDQGLFTVYK---RLFVLCVALNAAAVALAASGHFPYAERRAAVFAMGNILALTLCR 216

Query: 228 GKTLIQQPFWI 196
            +  ++  FW+
Sbjct: 217 SEAALRVVFWL 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,544,814
Number of Sequences: 37544
Number of extensions: 318155
Number of successful extensions: 652
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)