Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1267
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16333| Best HMM Match : SET (HMM E-Value=0.0053)                    69   4e-12
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   31   0.70 
SB_27962| Best HMM Match : Clathrin (HMM E-Value=4.1)                  31   1.2  
SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05)                     28   6.5  
SB_43219| Best HMM Match : zf-CCHC (HMM E-Value=0.0056)                28   8.6  
SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_16333| Best HMM Match : SET (HMM E-Value=0.0053)
          Length = 483

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 34/84 (40%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
 Frame = +2

Query: 275 RELSEYDDLATALIVDPYLGITTHKMNIRYRPLKTNKEELKNIIKEFIHTQDYNKAYSKL 454
           R+L+E DD+A++L+VD  LG TTHKM  R+RPLK +   +K  +  F++  D +KAY ++
Sbjct: 17  RQLAESDDIASSLVVDSVLGFTTHKMAARFRPLKIDATVVKRALLRFLNDGDVDKAYDEI 76

Query: 455 A--NGEWIPRHF-SKNKHQQTSFE 517
               G+W   +F +K+K+Q  +F+
Sbjct: 77  VFNAGDWGRCYFLNKSKNQIAAFK 100



 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 31/64 (48%), Positives = 41/64 (64%)
 Frame = +1

Query: 511 FRDHIYRYLRIFDKKAGFVIEPCYRYSLEGRVGAKISSTKKFFKHERIDFLVGCIAEMTE 690
           F+DH+ RY+ IF + AGF I  C RYS E   GAK+ ST  + K +++  L GCIAEM+E
Sbjct: 99  FKDHMLRYIGIFHRDAGFKIHKCNRYSGESN-GAKVVSTGHWAKGDKLPNLCGCIAEMSE 157

Query: 691 *RRK 702
              K
Sbjct: 158 EEEK 161


>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 299  DHRIQTAREE-SYPSAHLVEHLPSRVRR*SNNHSGYTNHRI 180
            DHR  + R E S    +  EH PSR RR S+NH G+  H +
Sbjct: 980  DHRRSSTRSEHSVQRRYSNEHSPSRKRRNSDNH-GHKKHSL 1019


>SB_27962| Best HMM Match : Clathrin (HMM E-Value=4.1)
          Length = 255

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 308 PLLDHRIQTAREESYPSAHLVEHLPSRVRR*SNNHSGYTNHRIYVKFIFISNNN 147
           PL DHR+  +  E++  + L +H        + NHS   +HR+Y   +   N++
Sbjct: 178 PLQDHRLYASLVEAFNHSPLQDHRLYASLVEAFNHSSLQDHRLYASLVEAFNHS 231



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 308 PLLDHRIQTAREESYPSAHLVEHLPSRVRR*SNNHSGYTNHRIYVKFIFISNNN 147
           PL DHR+  +  E++  + L +H        + NHS   +HR+Y   +   N++
Sbjct: 52  PLQDHRLYASLVEAFNHSPLQDHRLYASLVEAFNHSPLQDHRLYASLVEAFNHS 105



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 308 PLLDHRIQTAREESYPSAHLVEHLPSRVRR*SNNHSGYTNHRIYVKFIFISNNN 147
           PL DHR+  +  E++  + L +H        + NHS   +HR+Y   +   N++
Sbjct: 70  PLQDHRLYASLVEAFNHSPLQDHRLYASLVEAFNHSPLQDHRLYASLVEAFNHS 123



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 308 PLLDHRIQTAREESYPSAHLVEHLPSRVRR*SNNHSGYTNHRIYVKFIFISNNN 147
           PL DHR+  +  E++  + L +H        + NHS   +HR+Y   +   N++
Sbjct: 88  PLQDHRLYASLVEAFNHSPLQDHRLYASLVEAFNHSPLQDHRLYASLVEAFNHS 141



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 308 PLLDHRIQTAREESYPSAHLVEHLPSRVRR*SNNHSGYTNHRIYVKFIFISNNN 147
           PL DHR+  +  E++  + L +H        + NHS   +HR+Y   +   N++
Sbjct: 106 PLQDHRLYASLVEAFNHSPLQDHRLYASLVEAFNHSPLQDHRLYASLVEAFNHS 159



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 308 PLLDHRIQTAREESYPSAHLVEHLPSRVRR*SNNHSGYTNHRIYVKFIFISNNN 147
           PL DHR+  +  E++  + L +H        + NHS   +HR+Y   +   N++
Sbjct: 124 PLQDHRLYASLVEAFNHSPLQDHRLYASLVEAFNHSPLQDHRLYASLVEAFNHS 177



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 308 PLLDHRIQTAREESYPSAHLVEHLPSRVRR*SNNHSGYTNHRIYVKFIFISNNN 147
           PL DHR+  +  E++  + L +H        + NHS   +HR+Y   +   N++
Sbjct: 142 PLQDHRLYASLVEAFNHSPLQDHRLYASLVEAFNHSPLQDHRLYASLVEAFNHS 195



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 308 PLLDHRIQTAREESYPSAHLVEHLPSRVRR*SNNHSGYTNHRIYVKFIFISNNN 147
           PL DHR+  +  E++  + L +H        + NHS   +HR+Y   +   N++
Sbjct: 196 PLQDHRLYASLVEAFNHSSLQDHRLYASLVEAFNHSPLHDHRLYASLVEAFNHS 249



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 308 PLLDHRIQTAREESYPSAHLVEHLPSRVRR*SNNHSGYTNHRIYVKFIFISNNN 147
           PL DHR+  +  E++    L +H        + NHS   +HR+Y   +   N++
Sbjct: 34  PLQDHRLYASLVEAFNHLPLQDHRLYASLVEAFNHSPLQDHRLYASLVEAFNHS 87


>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 335 ITTHKMNIRYRPLKTNKEELKNIIKEFIHTQDYNKAYSKLANGEWIPRHFSKNK 496
           I  H  +  Y   K N  + K ++ E+IH +   KA SKL + +   R  +KNK
Sbjct: 143 IDNHMYHSLYMKSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQAEARR-NKNK 195


>SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05)
          Length = 1312

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 350 MNIRYRPLKTNKEELKNIIKEFIHTQDYNKAYS 448
           M  RY  LK    ELK  +KEF  +  +N+ YS
Sbjct: 290 MKRRYEDLKEENHELKTKLKEF-ESDTHNRGYS 321


>SB_43219| Best HMM Match : zf-CCHC (HMM E-Value=0.0056)
          Length = 693

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 200 QNGCWISVLPWKASAP 247
           +NGC+I+ LPWK   P
Sbjct: 530 ENGCYITGLPWKGDHP 545


>SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 238 CLPG*DADPTTILDTQIIEFT*NSYLFPITTSLV*NHSQTLTVRL 104
           CLP  D  P    D QI   +  SYL   + S V   S+TL ++L
Sbjct: 54  CLPAVDCHPGMNEDIQIKNGSCASYLHDYSNSSVITQSKTLLIKL 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,204,001
Number of Sequences: 59808
Number of extensions: 396855
Number of successful extensions: 768
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)