Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1267
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23511-4|AAC46793.1|  288|Caenorhabditis elegans Temporarily ass...    54   1e-07
U70855-1|AAB09161.1|  390|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U28740-5|AAA68320.1|  229|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z92786-4|CAB07206.1|  553|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   4.4  
AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical...    29   4.4  

>U23511-4|AAC46793.1|  288|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 337 protein.
          Length = 288

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 24/56 (42%), Positives = 37/56 (66%)
 Frame = +1

Query: 508 QFRDHIYRYLRIFDKKAGFVIEPCYRYSLEGRVGAKISSTKKFFKHERIDFLVGCI 675
           +FRDHI R+L +F   +G+ I+ C RYS EG  GAK+ ST  + + ++I+ L G +
Sbjct: 107 EFRDHIVRFLNMFILDSGYTIQECKRYSQEGHQGAKLVSTGVWSRGDKIERLSGVV 162



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +2

Query: 266 MTPRELSEYDDLATALIVDPYLGITTHKMNIRYRPLKTNK-EELKNIIKEFIHTQDYNKA 442
           MTP EL  +DD AT L+VD  L  TTHKM+ + R L  ++    + ++K F   +D+  A
Sbjct: 24  MTPTELCYFDDFATTLVVDSVLNFTTHKMSKKRRYLYQDEYRTARTVMKTFREQRDWTNA 83

Query: 443 YSKLANGEWIPRHFSK 490
              L     +    SK
Sbjct: 84  IYGLLTLRSVSHFLSK 99


>U70855-1|AAB09161.1|  390|Caenorhabditis elegans Hypothetical
           protein K08F11.3 protein.
          Length = 390

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -2

Query: 323 GPRLEPLLDHRIQTAREESYPSAHLVEHLPSRVRR*SNNHSGYTNHRIYVKFIF 162
           G + EP++D  I+    + Y       H    VR  SN + GY+N     + IF
Sbjct: 79  GEKCEPVVDSFIKNVAPQFYKGTGWASHAGIAVRVLSNLYKGYSNFHTVQEKIF 132


>U28740-5|AAA68320.1|  229|Caenorhabditis elegans Hypothetical
           protein B0563.7 protein.
          Length = 229

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +2

Query: 239 SAPQDEPMGMTPRELSEYDDLATALIVD--PYLGITTHKMNIRYRPLKTNKEELKNIIKE 412
           S P+D  M  T +EL EY  L      D    +G    K  +    L  NK E+ N+IKE
Sbjct: 36  SQPEDIQMKYTRKELKEYRQLFNMFDTDGSGAIGNEELKQAMISIGLHANKAEIDNVIKE 95


>Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical protein
            T11G6.5 protein.
          Length = 1406

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 239  SAPQDEPMGMTPRELSEYDDLATALIVDPYLGITTHKMNIRYRPLKTNKEELKNIIK 409
            S P       T R L ++D  +  +++DP LG    KMN     L T    LK ++K
Sbjct: 1228 SMPAGNGWMTTLRPLIDHDVESLCILIDPELGTDNMKMN-ELNSLFTEMHNLKKLMK 1283


>Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical
            protein T11G6.5 protein.
          Length = 1406

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 239  SAPQDEPMGMTPRELSEYDDLATALIVDPYLGITTHKMNIRYRPLKTNKEELKNIIK 409
            S P       T R L ++D  +  +++DP LG    KMN     L T    LK ++K
Sbjct: 1228 SMPAGNGWMTTLRPLIDHDVESLCILIDPELGTDNMKMN-ELNSLFTEMHNLKKLMK 1283


>Z92786-4|CAB07206.1|  553|Caenorhabditis elegans Hypothetical
           protein F47H4.7 protein.
          Length = 553

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 298 SSNGSNRGPISRHHDTQDEYP 360
           S + ++ GP +RHHD  D++P
Sbjct: 142 SQSANSPGPSARHHDKDDDFP 162


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = +2

Query: 374 KTNKEELKNIIKEFIHTQDYNKAYSKLANGEWIPRHFSKNKHQQTSFET 520
           ++++ + K+I  +   + +YNK+YS     +  P+  + N +  TS+ T
Sbjct: 583 QSSQHQTKSIPVQNYQSSNYNKSYSSQTTTQHQPQPVAANNNYSTSYHT 631


>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
           protein F53G12.3 protein.
          Length = 1503

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 380 NKEELKNIIKEFIHTQDYNKAYSKLANGEW 469
           +KE L + +++   TQ Y+  Y+ LAN EW
Sbjct: 24  SKETLFSALQQEAETQRYDGWYNNLANSEW 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,525,359
Number of Sequences: 27780
Number of extensions: 317676
Number of successful extensions: 756
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)