Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1267
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26100.1 68415.m03132 galactosyltransferase family protein co...    35   0.062
At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein ...    30   1.8  
At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein ...    30   1.8  
At1g40390.1 68414.m04790 hypothetical protein                          29   4.0  
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa...    28   5.3  
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6...    27   9.3  
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6...    27   9.3  
At1g64020.1 68414.m07251 serpin-related / serine protease inhibi...    27   9.3  
At1g30320.1 68414.m03708 remorin family protein contains Pfam do...    27   9.3  

>At2g26100.1 68415.m03132 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 371

 Score = 34.7 bits (76), Expect = 0.062
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -2

Query: 308 PLLDHRIQTAREESYPSAHLVEHLPSRVRR*SNNHSGYTNHRIYVKFIFIS 156
           PL  HR  TA   S  S        S+  + +++ S YT+ RI+V  IF S
Sbjct: 2   PLFSHRFTTASSSSPASPSYYNKPSSKTHKPNSSSSSYTSSRIHVAIIFFS 52


>At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 499

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
 Frame = +2

Query: 323 PYLGITTHKMNIRYRPLKT-----NKEELKNIIKEFIHTQDYNKAYSKLANGEWIPRHFS 487
           P+LG   +K + +++PLKT     N  +  +  K F  ++ + K +S +A+ +   +H  
Sbjct: 298 PFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKHCG 357

Query: 488 KNK 496
           KNK
Sbjct: 358 KNK 360


>At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 499

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
 Frame = +2

Query: 323 PYLGITTHKMNIRYRPLKT-----NKEELKNIIKEFIHTQDYNKAYSKLANGEWIPRHFS 487
           P+LG   +K + +++PLKT     N  +  +  K F  ++ + K +S +A+ +   +H  
Sbjct: 298 PFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKHCG 357

Query: 488 KNK 496
           KNK
Sbjct: 358 KNK 360


>At1g40390.1 68414.m04790 hypothetical protein
          Length = 426

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +2

Query: 170 ILRKFYDLCIQNGCWISVLPWKASAPQDEP 259
           ILRK  D  I NGCW++  P  ASA  D P
Sbjct: 183 ILRKL-DRAIVNGCWLATFP-TASAIFDPP 210


>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles: PF00097 zinc
           finger, C3HC4 type (RING finger), PF01697 Domain of
           unknown function
          Length = 913

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 411 SFIMFFNSSLFVFKGL*RIFILCVVMPRYGSTIRAVARSSYSDS 280
           SF++F  S++F+FKG  R  +   +      T RAV R S S S
Sbjct: 32  SFVLF--STMFIFKGKFRPVVRSTISFSTAVTARAVFRESISSS 73


>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
           subunit [Strongylocentrotus purpuratus] GI:3098603;
           contains Pfam profile PF00004: ATPase AAA family
          Length = 393

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 320 PRLEPLLDHRIQTAREESYPSAHLVEHL 237
           P++ P+L   I  A   + PSAHL  HL
Sbjct: 352 PKIGPILPEDIDRALSNTRPSAHLHAHL 379


>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
           subunit [Strongylocentrotus purpuratus] GI:3098603;
           contains Pfam profile PF00004: ATPase AAA family
          Length = 384

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 320 PRLEPLLDHRIQTAREESYPSAHLVEHL 237
           P++ P+L   I  A   + PSAHL  HL
Sbjct: 343 PKIGPILPEDIDRALSNTRPSAHLHAHL 370


>At1g64020.1 68414.m07251 serpin-related / serine protease
           inhibitor-related similar to phloem serpin-1 [Cucurbita
           maxima] GI:9937311
          Length = 121

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 449 KLANGEWIPRHFSKNKHQQTSFETIF 526
           K+ANG WI + FS +   +  FE  F
Sbjct: 93  KVANGAWIDQSFSIDSSSKNLFENFF 118


>At1g30320.1 68414.m03708 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 509

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 233 KASAPQDEPMGM-TPRELSEYDDLATALIVDPYLGITTHKMNIRYRPLKTNKEELKN 400
           +   P++  M   T RELSE ++ A        LG+   KMNI     K  +E  KN
Sbjct: 327 RGGQPEESSMSKNTRRELSEEEEKAKTRREIVALGVQLGKMNIAAWASKEEEENKKN 383


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,290,624
Number of Sequences: 28952
Number of extensions: 282348
Number of successful extensions: 635
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)