Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1266
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031632-1|CAA21004.1|  248|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z99102-2|CAB11775.1|  499|Caenorhabditis elegans Hypothetical pr...    28   9.2  
U40421-2|AAA81438.1|  453|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>AL031632-1|CAA21004.1|  248|Caenorhabditis elegans Hypothetical
           protein Y32B12B.1 protein.
          Length = 248

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 700 YKCLYLHIITMFNLVDQIEFIKTQSLFKTKYS 795
           Y+CL+L +I + NL     F+K    F+T +S
Sbjct: 21  YRCLWLFLIMLKNLETSKTFLKAAQNFRTPFS 52


>Z99102-2|CAB11775.1|  499|Caenorhabditis elegans Hypothetical
           protein B0331.1 protein.
          Length = 499

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 697 NYKCLYLHIITMFNLVDQIEFIKTQSLFK 783
           N K + +HI+  F L  ++EF +T+ LF+
Sbjct: 457 NEKVMLIHILRNFKLEPKLEFYETKPLFE 485


>U40421-2|AAA81438.1|  453|Caenorhabditis elegans Hypothetical
           protein C02B8.5 protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 29/114 (25%), Positives = 48/114 (42%)
 Frame = -3

Query: 628 VIVFYIYYCTIVSLVQPLSTYDRTT*NYRTINIYNSCSKNGH*SEPNTSFSAAHLVAASH 449
           V ++Y+Y  TIV  V P+            I++  S S N   S+  T      L  + +
Sbjct: 99  VRIYYVYMYTIVMAVGPVLLLIVIN-TAIVISMRRSSSPNSE-SDIITLVLVVCLFISCN 156

Query: 448 TLTLRIQFIYLNLLLVNSID*QIKSIHKIYKTSMKVLIELLY*RNDCRTPRSVV 287
            L L + F+ L   ++NS    + ++  +  +S   LI   +  N  RT R  V
Sbjct: 157 VLPLTVNFLELLFGIINSYLIDLSNLMVVVNSSCNFLIYYTFGSNFRRTLRYYV 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,078,844
Number of Sequences: 27780
Number of extensions: 264248
Number of successful extensions: 518
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)