Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1265
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068711-2|AAC17776.1|  414|Caenorhabditis elegans Hypothetical ...    28   5.9  

>AF068711-2|AAC17776.1|  414|Caenorhabditis elegans Hypothetical
           protein R09A1.2 protein.
          Length = 414

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
 Frame = +3

Query: 72  LYGAYSKAYAYVIHV--KCWHLL*PPIRSKEIVSYSSYLYINT*SKNFVSLFTKIARTEE 245
           +  AYS A+A       KC+ L   P+    +     Y+Y    +    +L   +     
Sbjct: 99  MLAAYSPAFAEKFRKPNKCFVLEMQPLDKTSVKRVLDYIYFGKVTFRLATLHEDLKAISY 158

Query: 246 HEISTLIENIEKKCTML 296
            EI TL E++EK+   L
Sbjct: 159 FEIVTLQEDVEKRLVEL 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,369,592
Number of Sequences: 27780
Number of extensions: 268907
Number of successful extensions: 501
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)