BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1264 (694 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 29 0.64 SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.5 SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 27 1.9 SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 3.4 SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy... 25 7.9 >SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|Schizosaccharomyces pombe|chr 1|||Manual Length = 1199 Score = 29.1 bits (62), Expect = 0.64 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = +3 Query: 447 DRMAPSAAQEFVKNVRGKPKRMVEALHKDLRRSKMAAILLEVDYLIND 590 +R APS VK V P ++ +ALH +R S +L +Y+I D Sbjct: 486 ERWAPS----IVKIVYKGPPQVRKALHPQVRHSNFQVLLTTYEYIIKD 529 >SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 646 Score = 27.9 bits (59), Expect = 1.5 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +1 Query: 466 QLKNLLRMYEENQNAWWRPYTRISDE 543 Q K+L+R Y E+ WR Y +D+ Sbjct: 54 QFKSLIRKYSEDSTLAWRDYENYNDD 79 >SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 406 Score = 27.5 bits (58), Expect = 1.9 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = +2 Query: 338 NSR*QSGILQHPNKRRCQLLRPSKKLETLSIAAQPGR*NGAVSSSRI 478 N SG+LQ +KR P K ++ S QP R +GA S++ + Sbjct: 133 NETSSSGLLQSKDKRSQSPHSPKKPVKNSSSRDQPVRNSGATSTASL 179 >SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 647 Score = 26.6 bits (56), Expect = 3.4 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +1 Query: 367 TSKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQQLKNL 480 TSK T SAA+ K + + T++PI +++ L Sbjct: 202 TSKPATTSAAQPSSKVEENMAKATSQPITTAEKEIPEL 239 >SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 25.4 bits (53), Expect = 7.9 Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Frame = +1 Query: 442 RPIEWRR-QQLKNLLRMYEENQNAWW 516 +P W + +KN++R Y + + WW Sbjct: 157 KPAPWAKIPMIKNVIRKYPDAEWVWW 182 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,560,745 Number of Sequences: 5004 Number of extensions: 48272 Number of successful extensions: 121 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 119 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 121 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 321951680 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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