Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1264
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    29   0.64 
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.5  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    27   1.9  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.4  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   7.9  

>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 447 DRMAPSAAQEFVKNVRGKPKRMVEALHKDLRRSKMAAILLEVDYLIND 590
           +R APS     VK V   P ++ +ALH  +R S    +L   +Y+I D
Sbjct: 486 ERWAPS----IVKIVYKGPPQVRKALHPQVRHSNFQVLLTTYEYIIKD 529


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 466 QLKNLLRMYEENQNAWWRPYTRISDE 543
           Q K+L+R Y E+    WR Y   +D+
Sbjct: 54  QFKSLIRKYSEDSTLAWRDYENYNDD 79


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 338 NSR*QSGILQHPNKRRCQLLRPSKKLETLSIAAQPGR*NGAVSSSRI 478
           N    SG+LQ  +KR      P K ++  S   QP R +GA S++ +
Sbjct: 133 NETSSSGLLQSKDKRSQSPHSPKKPVKNSSSRDQPVRNSGATSTASL 179


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 367 TSKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQQLKNL 480
           TSK  T SAA+   K  +   + T++PI    +++  L
Sbjct: 202 TSKPATTSAAQPSSKVEENMAKATSQPITTAEKEIPEL 239


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 442 RPIEWRR-QQLKNLLRMYEENQNAWW 516
           +P  W +   +KN++R Y + +  WW
Sbjct: 157 KPAPWAKIPMIKNVIRKYPDAEWVWW 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,745
Number of Sequences: 5004
Number of extensions: 48272
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)